RNA–Protein interactions for RNA: ENST00000242776.8

DDX39A-201, Transcript of DExD-box helicase 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX39A, Length 1,471 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-201ENST00000242776 FAM69CQ0P6D2 419 aa24.62■■□□□ 1.53
DDX39A-201ENST00000242776 RUSC2Q8N2Y8 1516 aa24.6■■□□□ 1.53
DDX39A-201ENST00000242776 NPM1P06748 294 aaKnown RBP eCLIP24.58■■□□□ 1.52
DDX39A-201ENST00000242776 ADCY10Q96PN6 1610 aa24.52■■□□□ 1.52
DDX39A-201ENST00000242776 ABCC10Q5T3U5 1492 aa24.52■■□□□ 1.52
DDX39A-201ENST00000242776 TSPOAP1O95153 1857 aa24.52■■□□□ 1.52
DDX39A-201ENST00000242776 DIP2BQ9P265 1576 aa24.49■■□□□ 1.51
DDX39A-201ENST00000242776 TTBK1Q5TCY1 1321 aaPredicted RBP24.48■■□□□ 1.51
DDX39A-201ENST00000242776 MAPKBP1O60336 1514 aa24.46■■□□□ 1.51
DDX39A-201ENST00000242776 KDM6BO15054 1643 aa24.42■■□□□ 1.5
DDX39A-201ENST00000242776 KIAA0586Q9BVV6 1533 aa24.38■■□□□ 1.49
DDX39A-201ENST00000242776 IGF1RP08069 1367 aa24.35■■□□□ 1.49
DDX39A-201ENST00000242776 KDM4FA0A1W2PPD8 638 aa24.34■■□□□ 1.49
DDX39A-201ENST00000242776 CUL7Q14999 1698 aa24.34■■□□□ 1.49
DDX39A-201ENST00000242776 KIF27Q86VH2 1401 aa24.31■■□□□ 1.48
DDX39A-201ENST00000242776 PTPRGP23470 1445 aa24.29■■□□□ 1.48
DDX39A-201ENST00000242776 CARMIL1Q5VZK9 1371 aa24.21■■□□□ 1.47
DDX39A-201ENST00000242776 TNIKQ9UKE5 1360 aa24.18■■□□□ 1.46
DDX39A-201ENST00000242776 CARMIL2Q6F5E8 1435 aa24.18■■□□□ 1.46
DDX39A-201ENST00000242776 ASXL2Q76L83 1435 aa24.17■■□□□ 1.46
DDX39A-201ENST00000242776 ABCC2Q92887 1545 aa24.17■■□□□ 1.46
DDX39A-201ENST00000242776 PPRC1Q5VV67 1664 aaKnown RBP24.16■■□□□ 1.46
DDX39A-201ENST00000242776 IQGAP2Q13576 1575 aa24.15■■□□□ 1.46
DDX39A-201ENST00000242776 PLB1Q6P1J6 1458 aa24.1■■□□□ 1.45
DDX39A-201ENST00000242776 GLI2P10070 1586 aa24.07■■□□□ 1.44
DDX39A-201ENST00000242776 ADGRL1O94910 1474 aa24.07■■□□□ 1.44
DDX39A-201ENST00000242776 UACAQ9BZF9 1416 aa24.06■■□□□ 1.44
DDX39A-201ENST00000242776 DISP1Q96F81 1524 aa24.04■■□□□ 1.44
DDX39A-201ENST00000242776 ILDR1Q86SU0 546 aaPredicted RBP24.04■■□□□ 1.44
DDX39A-201ENST00000242776 UHRF1BP1LA0JNW5 1464 aa24.03■■□□□ 1.44
DDX39A-201ENST00000242776 ZCCHC11Q5TAX3 1644 aaKnown RBP24.02■■□□□ 1.44
DDX39A-201ENST00000242776 COL17A1Q9UMD9 1497 aaPredicted RBP24.02■■□□□ 1.43
DDX39A-201ENST00000242776 EPRSP07814 1512 aaKnown RBP24■■□□□ 1.43
DDX39A-201ENST00000242776 MAP3K4Q9Y6R4 1608 aa24■■□□□ 1.43
DDX39A-201ENST00000242776 KDM5BQ9UGL1 1544 aa23.95■■□□□ 1.42
DDX39A-201ENST00000242776 KIAA0556O60303 1618 aa23.94■■□□□ 1.42
DDX39A-201ENST00000242776 UGGT2Q9NYU1 1516 aa23.93■■□□□ 1.42
DDX39A-201ENST00000242776 RAPGEF2Q9Y4G8 1499 aa23.93■■□□□ 1.42
DDX39A-201ENST00000242776 TEX14Q8IWB6 1497 aa23.91■■□□□ 1.42
DDX39A-201ENST00000242776 HECW2Q9P2P5 1572 aa23.88■■□□□ 1.41
DDX39A-201ENST00000242776 KCNH8Q96L42 1107 aa23.85■■□□□ 1.41
DDX39A-201ENST00000242776 WDR7Q9Y4E6 1490 aa23.84■■□□□ 1.41
DDX39A-201ENST00000242776 CTTNBP2Q8WZ74 1663 aa23.83■■□□□ 1.41
DDX39A-201ENST00000242776 CD109Q6YHK3 1445 aa23.77■■□□□ 1.4
DDX39A-201ENST00000242776 ARID3CA6NKF2 412 aa23.76■■□□□ 1.39
DDX39A-201ENST00000242776 CFAP43Q8NDM7 1665 aa23.75■■□□□ 1.39
DDX39A-201ENST00000242776 KIF21BO75037 1637 aa23.72■■□□□ 1.39
DDX39A-201ENST00000242776 ABCA8O94911 1581 aa23.72■■□□□ 1.39
DDX39A-201ENST00000242776 GOLGA3Q08378 1498 aa23.7■■□□□ 1.38
DDX39A-201ENST00000242776 MAGI3Q5TCQ9 1506 aa23.69■■□□□ 1.38
DDX39A-201ENST00000242776 P3H3Q8IVL6 736 aa23.67■■□□□ 1.38
DDX39A-201ENST00000242776 PRXQ9BXM0 1461 aa23.54■■□□□ 1.36
DDX39A-201ENST00000242776 ATP10BO94823 1461 aa23.54■■□□□ 1.36
DDX39A-201ENST00000242776 FAM9AQ8IZU1 332 aaPredicted RBP23.52■■□□□ 1.36
DDX39A-201ENST00000242776 ARAP3Q8WWN8 1544 aa23.52■■□□□ 1.36
DDX39A-201ENST00000242776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.51■■□□□ 1.35
DDX39A-201ENST00000242776 HNRNPUL2Q1KMD3 747 aaKnown RBP23.51■■□□□ 1.35
DDX39A-201ENST00000242776 RAPGEF3O95398 923 aa23.5■■□□□ 1.35
DDX39A-201ENST00000242776 RANGAP1P46060 587 aaPredicted RBP23.49■■□□□ 1.35
DDX39A-201ENST00000242776 ABCA9Q8IUA7 1624 aa23.48■■□□□ 1.35
DDX39A-201ENST00000242776 ADAMTSL3P82987 1691 aa23.45■■□□□ 1.34
DDX39A-201ENST00000242776 ARID4BQ4LE39 1312 aaPredicted RBP23.45■■□□□ 1.34
DDX39A-201ENST00000242776 PTPRMP28827 1452 aa23.45■■□□□ 1.34
DDX39A-201ENST00000242776 RAPGEF6Q8TEU7 1601 aa23.44■■□□□ 1.34
DDX39A-201ENST00000242776 SAMD9Q5K651 1589 aa23.39■■□□□ 1.34
DDX39A-201ENST00000242776 MADDQ8WXG6 1647 aa23.39■■□□□ 1.34
DDX39A-201ENST00000242776 PLPPR3Q6T4P5 718 aa23.39■■□□□ 1.34
DDX39A-201ENST00000242776 FBXO41Q8TF61 875 aa23.39■■□□□ 1.34
DDX39A-201ENST00000242776 BCORL1Q5H9F3 1711 aa23.39■■□□□ 1.33
DDX39A-201ENST00000242776 FRMPD1Q5SYB0 1578 aa23.39■■□□□ 1.33
DDX39A-201ENST00000242776 PHLDB1Q86UU1 1377 aa23.36■■□□□ 1.33
DDX39A-201ENST00000242776 NEO1Q92859 1461 aa23.35■■□□□ 1.33
DDX39A-201ENST00000242776 RIMS1Q86UR5 1692 aaKnown RBP23.34■■□□□ 1.33
DDX39A-201ENST00000242776 CSRNP3Q8WYN3 585 aa23.33■■□□□ 1.33
DDX39A-201ENST00000242776 NUP153P49790 1475 aaKnown RBP23.31■■□□□ 1.32
DDX39A-201ENST00000242776 FHOD3Q2V2M9 1422 aa23.31■■□□□ 1.32
DDX39A-201ENST00000242776 PCF11O94913 1555 aaKnown RBP23.29■■□□□ 1.32
DDX39A-201ENST00000242776 RICTORQ6R327 1708 aa23.27■■□□□ 1.32
DDX39A-201ENST00000242776 LMTK3Q96Q04 1460 aa23.27■■□□□ 1.32
DDX39A-201ENST00000242776 ARHGEF40Q8TER5 1519 aa23.26■■□□□ 1.31
DDX39A-201ENST00000242776 DENND4BO75064 1496 aaPredicted RBP23.25■■□□□ 1.31
DDX39A-201ENST00000242776 PLEKHD1A6NEE1 506 aa23.24■■□□□ 1.31
DDX39A-201ENST00000242776 HSPA2P54652 639 aa23.24■■□□□ 1.31
DDX39A-201ENST00000242776 AKNAQ7Z591 1439 aa23.23■■□□□ 1.31
DDX39A-201ENST00000242776 FANCAO15360 1455 aa23.22■■□□□ 1.31
DDX39A-201ENST00000242776 MLECQ14165 292 aa23.21■■□□□ 1.31
DDX39A-201ENST00000242776 SIGLEC1Q9BZZ2 1709 aa23.2■■□□□ 1.3
DDX39A-201ENST00000242776 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.2■■□□□ 1.34e-7■■□□□ 11.9
DDX39A-201ENST00000242776 TTC37Q6PGP7 1564 aa23.2■■□□□ 1.3
DDX39A-201ENST00000242776 CFAP74Q9C0B2 1584 aa23.19■■□□□ 1.3
DDX39A-201ENST00000242776 EHMT2Q96KQ7 1210 aa23.17■■□□□ 1.3
DDX39A-201ENST00000242776 YEATS2Q9ULM3 1422 aa23.16■■□□□ 1.3
DDX39A-201ENST00000242776 ZFYVE16Q7Z3T8 1539 aa23.15■■□□□ 1.3
DDX39A-201ENST00000242776 CDK13Q14004 1512 aaKnown RBP23.14■■□□□ 1.3
DDX39A-201ENST00000242776 POGZQ7Z3K3 1410 aa23.13■■□□□ 1.29
DDX39A-201ENST00000242776 FER1L4A9Z1Z3 1794 aa23.12■■□□□ 1.29
DDX39A-201ENST00000242776 ATP1B4Q9UN42 357 aaPredicted RBP23.11■■□□□ 1.29
DDX39A-201ENST00000242776 HECW1Q76N89 1606 aa23.11■■□□□ 1.29
DDX39A-201ENST00000242776 EFCAB5A4FU69 1503 aa23.1■■□□□ 1.29
DDX39A-201ENST00000242776 ZMYM4Q5VZL5 1548 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms