RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 HIRIP3Q9BW71 556 aaPredicted RBP17.91■□□□□ 0.46
SF3A1-201ENST00000215793 PLEKHD1A6NEE1 506 aa17.91■□□□□ 0.46
SF3A1-201ENST00000215793 IRX6P78412 446 aaPredicted RBP17.88■□□□□ 0.45
SF3A1-201ENST00000215793 CDCA8Q53HL2 280 aa17.88■□□□□ 0.45
SF3A1-201ENST00000215793 BECN1Q14457 450 aa17.88■□□□□ 0.45
SF3A1-201ENST00000215793 GOLGA3Q08378 1498 aa17.88■□□□□ 0.45
SF3A1-201ENST00000215793 DDRGK1Q96HY6 314 aa17.87■□□□□ 0.45
SF3A1-201ENST00000215793 ANP32EQ9BTT0 268 aa17.85■□□□□ 0.45
SF3A1-201ENST00000215793 PPP1R15AO75807 674 aaPredicted RBP17.85■□□□□ 0.45
SF3A1-201ENST00000215793 CFAP53Q96M91 514 aa17.85■□□□□ 0.45
SF3A1-201ENST00000215793 CEP162Q5TB80 1403 aa17.84■□□□□ 0.45
SF3A1-201ENST00000215793 ARXQ96QS3 562 aa17.84■□□□□ 0.45
SF3A1-201ENST00000215793 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
SF3A1-201ENST00000215793 KCNH8Q96L42 1107 aa17.81■□□□□ 0.44
SF3A1-201ENST00000215793 RGL3Q3MIN7 710 aa17.8■□□□□ 0.44
SF3A1-201ENST00000215793 KNSTRNQ9Y448 316 aa17.8■□□□□ 0.44
SF3A1-201ENST00000215793 NCLP19338 710 aaKnown RBP17.79■□□□□ 0.44
SF3A1-201ENST00000215793 GOLGA6L22H0YM25 854 aa17.79■□□□□ 0.44
SF3A1-201ENST00000215793 CFDP1Q9UEE9 299 aaPredicted RBP17.79■□□□□ 0.44
SF3A1-201ENST00000215793 WRNQ14191 1432 aaPredicted RBP eCLIP17.75■□□□□ 0.43
SF3A1-201ENST00000215793 C14orf37Q86TY3 774 aa17.75■□□□□ 0.43
SF3A1-201ENST00000215793 CARD11Q9BXL7 1154 aa17.74■□□□□ 0.43
SF3A1-201ENST00000215793 CDK11BP21127 795 aaKnown RBP17.74■□□□□ 0.43
SF3A1-201ENST00000215793 KIF27Q86VH2 1401 aa17.73■□□□□ 0.43
SF3A1-201ENST00000215793 TNIKQ9UKE5 1360 aa17.73■□□□□ 0.43
SF3A1-201ENST00000215793 CCDC180Q9P1Z9 1646 aa17.72■□□□□ 0.43
SF3A1-201ENST00000215793 TRIM44Q96DX7 344 aaPredicted RBP17.72■□□□□ 0.43
SF3A1-201ENST00000215793 A0A0G2JS52 829 aa17.71■□□□□ 0.43
SF3A1-201ENST00000215793 ZBTB7CA1YPR0 619 aa17.7■□□□□ 0.42
SF3A1-201ENST00000215793 CEP164Q9UPV0 1460 aa17.69■□□□□ 0.42
SF3A1-201ENST00000215793 FTSJ3Q8IY81 847 aaKnown RBP17.68■□□□□ 0.42
SF3A1-201ENST00000215793 RB1CC1Q8TDY2 1594 aa17.68■□□□□ 0.42
SF3A1-201ENST00000215793 CASC1Q6TDU7 716 aa17.68■□□□□ 0.42
SF3A1-201ENST00000215793 NUDCQ9Y266 331 aa17.67■□□□□ 0.42
SF3A1-201ENST00000215793 SUPT16HQ9Y5B9 1047 aaKnown RBP17.67■□□□□ 0.42
SF3A1-201ENST00000215793 PPM1GO15355 546 aaPredicted RBP17.66■□□□□ 0.42
SF3A1-201ENST00000215793 MAPK8IP3Q9UPT6 1336 aa17.66■□□□□ 0.42
SF3A1-201ENST00000215793 SENP3Q9H4L4 574 aaPredicted RBP17.64■□□□□ 0.41
SF3A1-201ENST00000215793 CHMP4BQ9H444 224 aaKnown RBP17.63■□□□□ 0.41
SF3A1-201ENST00000215793 PPP4R2Q9NY27 417 aa17.62■□□□□ 0.41
SF3A1-201ENST00000215793 ZRSR1Q15695 479 aaKnown RBP17.62■□□□□ 0.41
SF3A1-201ENST00000215793 PLEKHG5O94827 1062 aa17.61■□□□□ 0.41
SF3A1-201ENST00000215793 BAZ1BQ9UIG0 1483 aaKnown RBP17.61■□□□□ 0.41
SF3A1-201ENST00000215793 MS4A1P11836 297 aa17.6■□□□□ 0.41
SF3A1-201ENST00000215793 NEUROD2Q15784 382 aa17.59■□□□□ 0.41
SF3A1-201ENST00000215793 HAP1P54257 671 aaPredicted RBP17.58■□□□□ 0.41
SF3A1-201ENST00000215793 MYO15BQ96JP2 1530 aa17.58■□□□□ 0.41
SF3A1-201ENST00000215793 TIMELESSQ9UNS1 1208 aa17.58■□□□□ 0.4
SF3A1-201ENST00000215793 POGKQ9P215 609 aa17.58■□□□□ 0.4
SF3A1-201ENST00000215793 ARID4BQ4LE39 1312 aaPredicted RBP17.58■□□□□ 0.4
SF3A1-201ENST00000215793 SIN3AQ96ST3 1273 aa17.56■□□□□ 0.4
SF3A1-201ENST00000215793 PTMAP06454 111 aaKnown RBP17.56■□□□□ 0.4
SF3A1-201ENST00000215793 FHAD1B1AJZ9 1412 aa17.54■□□□□ 0.4
SF3A1-201ENST00000215793 SENP3-EIF4A1A0A087X0R7 540 aa17.54■□□□□ 0.4
SF3A1-201ENST00000215793 PNNQ9H307 717 aaKnown RBP17.54■□□□□ 0.4
SF3A1-201ENST00000215793 LAS1LQ9Y4W2 734 aaKnown RBP17.54■□□□□ 0.4
SF3A1-201ENST00000215793 ERICH6BQ5W0A0 696 aa17.53■□□□□ 0.4
SF3A1-201ENST00000215793 FRAT1Q92837 279 aaPredicted RBP17.52■□□□□ 0.4
SF3A1-201ENST00000215793 CCNB3Q8WWL7 1395 aa17.52■□□□□ 0.4
SF3A1-201ENST00000215793 RGS3P49796 1198 aa17.51■□□□□ 0.39
SF3A1-201ENST00000215793 TMF1P82094 1093 aa17.51■□□□□ 0.39
SF3A1-201ENST00000215793 NACADO15069 1562 aa17.49■□□□□ 0.39
SF3A1-201ENST00000215793 CC2D1BQ5T0F9 858 aaKnown RBP17.47■□□□□ 0.39
SF3A1-201ENST00000215793 U2SURPO15042 1029 aaKnown RBP17.47■□□□□ 0.39
SF3A1-201ENST00000215793 DNTTIP2Q5QJE6 756 aaKnown RBP17.46■□□□□ 0.39
SF3A1-201ENST00000215793 TNNT2P45379 298 aaPredicted RBP17.45■□□□□ 0.38
SF3A1-201ENST00000215793 DCAF11Q8TEB1 546 aa17.45■□□□□ 0.38
SF3A1-201ENST00000215793 NOP58Q9Y2X3 529 aaKnown RBP17.44■□□□□ 0.38
SF3A1-201ENST00000215793 KANK1Q14678 1352 aa17.44■□□□□ 0.38
SF3A1-201ENST00000215793 CCER2I3L3R5 266 aa17.43■□□□□ 0.38
SF3A1-201ENST00000215793 LMOD2Q6P5Q4 547 aa17.43■□□□□ 0.38
SF3A1-201ENST00000215793 OS9Q13438 667 aaPredicted RBP17.42■□□□□ 0.38
SF3A1-201ENST00000215793 HSP90AB1P08238 724 aaKnown RBP17.42■□□□□ 0.38
SF3A1-201ENST00000215793 HDGFP51858 240 aaKnown RBP17.41■□□□□ 0.38
SF3A1-201ENST00000215793 CARMIL1Q5VZK9 1371 aa17.41■□□□□ 0.38
SF3A1-201ENST00000215793 FGD1P98174 961 aa17.41■□□□□ 0.38
SF3A1-201ENST00000215793 BAZ1AQ9NRL2 1556 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-201ENST00000215793 B4GALNT3Q6L9W6 998 aa17.39■□□□□ 0.37
SF3A1-201ENST00000215793 KCNJ4P48050 445 aa17.38■□□□□ 0.37
SF3A1-201ENST00000215793 CFAP44Q96MT7 982 aa17.37■□□□□ 0.37
SF3A1-201ENST00000215793 NRDCO43847 1150 aa17.36■□□□□ 0.37
SF3A1-201ENST00000215793 TPRNQ4KMQ1 711 aa17.36■□□□□ 0.37
SF3A1-201ENST00000215793 GOLGA6L6A8MZA4 724 aa17.36■□□□□ 0.37
SF3A1-201ENST00000215793 MORC1Q86VD1 984 aa17.36■□□□□ 0.37
SF3A1-201ENST00000215793 ERCC6Q03468 1493 aa17.36■□□□□ 0.37
SF3A1-201ENST00000215793 HSCBQ8IWL3 235 aa17.35■□□□□ 0.37
SF3A1-201ENST00000215793 PLCB2Q00722 1185 aa17.35■□□□□ 0.37
SF3A1-201ENST00000215793 SRPK2P78362 688 aaKnown RBP17.34■□□□□ 0.37
SF3A1-201ENST00000215793 SETD5Q9C0A6 1442 aa17.34■□□□□ 0.37
SF3A1-201ENST00000215793 CUX2O14529 1486 aa17.33■□□□□ 0.36
SF3A1-201ENST00000215793 GOLGA6L4A6NEF3 574 aa17.32■□□□□ 0.36
SF3A1-201ENST00000215793 NPHP1O15259 732 aa17.32■□□□□ 0.36
SF3A1-201ENST00000215793 MCCP23508 829 aa17.31■□□□□ 0.36
SF3A1-201ENST00000215793 NAP1L5Q96NT1 182 aaPredicted RBP17.31■□□□□ 0.36
SF3A1-201ENST00000215793 HSPA5P11021 654 aaKnown RBP17.3■□□□□ 0.36
SF3A1-201ENST00000215793 VPS8Q8N3P4 1428 aa17.3■□□□□ 0.36
SF3A1-201ENST00000215793 KTN1Q86UP2 1357 aaKnown RBP17.29■□□□□ 0.36
SF3A1-201ENST00000215793 IPO8O15397 1037 aaKnown RBP17.29■□□□□ 0.36
SF3A1-201ENST00000215793 GOLGA2Q08379 1002 aa17.29■□□□□ 0.36
SF3A1-201ENST00000215793 PKD2Q13563 968 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms