RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Anp32aO35381 247 aa21.48■■□□□ 1.03
Ccdc88b-201ENSMUST00000113440 Fmn1Q05860 1466 aa21.48■■□□□ 1.03
Ccdc88b-201ENSMUST00000113440 Erich6D3Z6S9 713 aa21.48■■□□□ 1.03
Ccdc88b-201ENSMUST00000113440 Aplp2Q06335 707 aa21.44■■□□□ 1.02
Ccdc88b-201ENSMUST00000113440 Rapgef2Q8CHG7 1496 aa21.26■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Gm13697A2AK42 830 aa21.26■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Arhgap27A2AB59 869 aa21.22■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Prdm10Q3UTQ7 1184 aa21.21■□□□□ 0.99
Ccdc88b-201ENSMUST00000113440 Smarca4Q3TKT4 1613 aaKnown RBP21.2■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Atp1b4Q99ME6 356 aa21.2■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Atad2bE9Q166 1460 aaKnown RBP21.17■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Mrs2Q5NCE8 434 aa21.17■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Hdac5Q9Z2V6 1113 aa21.16■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 1700123L14RikQ3V2K7 440 aa21.16■□□□□ 0.98
Ccdc88b-201ENSMUST00000113440 Calr4Q3TQS0 420 aa21.12■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Nlrp6Q91WS2 869 aa21.12■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Cttnbp2B9EJA2 1648 aa21.11■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Hspa5P20029 655 aaKnown RBP21.1■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Clstn2Q9ER65 966 aa21.09■□□□□ 0.97
Ccdc88b-201ENSMUST00000113440 Rgl3Q3UYI5 709 aa21.08■□□□□ 0.96
Ccdc88b-201ENSMUST00000113440 Cux2P70298 1426 aa21.06■□□□□ 0.96
Ccdc88b-201ENSMUST00000113440 DaxxO35613 739 aa21.02■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Aebp1Q640N1 1128 aa21.01■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Baz1bQ9Z277 1479 aa21.01■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Mia2Q91ZV0 1396 aa20.99■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Ppp4r2Q0VGB7 417 aa20.98■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Phldb1Q6PDH0 1371 aaKnown RBP20.97■□□□□ 0.95
Ccdc88b-201ENSMUST00000113440 Kif27Q7M6Z4 1394 aa20.95■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Mtus2Q3UHD3 1353 aa20.94■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Iqgap2Q3UQ44 1575 aa20.94■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Gm13695A2AK44 830 aa20.94■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Plppr3Q7TPB0 716 aa20.93■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Grwd1Q810D6 446 aaKnown RBP20.92■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Rad21Q61550 635 aaKnown RBP20.9■□□□□ 0.94
Ccdc88b-201ENSMUST00000113440 Polr3glQ8R0C0 218 aa20.89■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Cc2d2aQ8CFW7 1633 aa20.88■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 P3h3Q8CG70 732 aa20.87■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Rpap1Q80TE0 1409 aa20.86■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 CntlnA2AM05 1397 aa20.86■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Sin3aQ60520 1274 aaKnown RBP20.85■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Rrp7aQ9D1C9 280 aaKnown RBP20.85■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Fyco1Q8VDC1 1437 aa20.84■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 Wdr43Q6ZQL4 677 aaKnown RBP20.84■□□□□ 0.93
Ccdc88b-201ENSMUST00000113440 SafbD3YXK2 937 aaKnown RBP20.82■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Carmil1Q6EDY6 1374 aa20.81■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Arhgap35Q91YM2 1499 aa20.8■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Card11Q8CIS0 1159 aa20.78■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 LrpprcQ6PB66 1392 aaKnown RBP20.78■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Top2aQ01320 1528 aaKnown RBP20.77■□□□□ 0.92
Ccdc88b-201ENSMUST00000113440 Cabp1Q9JLK7 227 aa20.76■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Pkd2O35245 966 aa20.76■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Kdm2aP59997 1161 aa20.76■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Fam71e1A1L3C1 212 aa20.74■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Mroh3A0A1D5RM54 893 aa20.73■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Ofd1Q80Z25 1017 aa20.73■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Wwc2Q6NXJ0 1187 aa20.72■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 Mphosph9A6H5Y1 991 aa20.72■□□□□ 0.91
Ccdc88b-201ENSMUST00000113440 BicraF8VPZ9 1578 aa20.7■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Ccdc9Q8VC31 543 aaKnown RBP20.7■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Cwc22Q8C5N3 908 aaKnown RBP20.69■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Upf2A2AT37 1269 aaKnown RBP20.67■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 AknaQ80VW7 1404 aa20.67■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Dhx29Q6PGC1 1365 aaKnown RBP20.67■□□□□ 0.9
Ccdc88b-201ENSMUST00000113440 Map4P27546 1125 aaKnown RBP20.63■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Rangap1P46061 589 aaKnown RBP20.63■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Ccnb3Q810T2 1396 aa20.63■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 ArxO35085 564 aa20.6■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Srpk2O54781 681 aaKnown RBP20.6■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Trak1Q6PD31 939 aa20.6■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Shroom4Q1W617 1475 aa20.59■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Gm20521D3Z5F7 333 aa20.58■□□□□ 0.89
Ccdc88b-201ENSMUST00000113440 Rundc1Q0VDN7 615 aa20.58■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Stk24Q99KH8 431 aa20.57■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Safb2Q80YR5 991 aaKnown RBP20.56■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Top2bQ64511 1612 aa20.56■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Exoc6Q8R313 802 aa20.54■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Hsp90aa1P07901 733 aaKnown RBP20.53■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 PtprkP35822 1457 aa20.53■□□□□ 0.88
Ccdc88b-201ENSMUST00000113440 Arap1Q4LDD4 1452 aa20.51■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 IqubQ8CDK3 788 aa20.5■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Arid3cA6PWV5 409 aa20.49■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Plekhh2Q8C115 1491 aa20.47■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Naip1Q9QWK5 1403 aa20.46■□□□□ 0.87
Ccdc88b-201ENSMUST00000113440 Efcab5A0JP43 1406 aa20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Ncapd3Q6ZQK0 1506 aa20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Dhx57Q6P5D3 1388 aaKnown RBP20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Trim26Q99PN3 545 aa20.45■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Frmpd1A2AKB4 1549 aa20.43■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 NrkQ9R0G8 1455 aa20.43■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 WrnO09053 1401 aa20.43■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Apbb1Q9QXJ1 710 aa20.42■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Ifit1bl1D3Z6F0 470 aa20.41■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Exosc9Q9JHI7 438 aaKnown RBP20.4■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 UacaQ8CGB3 1411 aa20.4■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Slc4a3P16283 1227 aa20.4■□□□□ 0.86
Ccdc88b-201ENSMUST00000113440 Nup155Q99P88 1391 aaKnown RBP20.39■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Rad54l2Q99NG0 1466 aa20.39■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Neurod2Q62414 383 aa20.38■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Bcl11aQ9QYE3 773 aa20.38■□□□□ 0.85
Ccdc88b-201ENSMUST00000113440 Usp47Q8BY87 1376 aa20.38■□□□□ 0.85
Retrieved 100 of 22,080 RNA–protein pairs in 33.9 ms