RNA–Protein interactions for RNA: ENSMUST00000041643.3

Pcif1-201, Transcript of Phosphorylated CTD-interacting factor 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Pcif1, Length 5,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1-201ENSMUST00000041643 NeflP08551 543 aa16.51■□□□□ 0.23
Pcif1-201ENSMUST00000041643 Iqgap2Q3UQ44 1575 aa16.49■□□□□ 0.23
Pcif1-201ENSMUST00000041643 Cep162Q6ZQ06 1403 aa16.46■□□□□ 0.23
Pcif1-201ENSMUST00000041643 Prdm10Q3UTQ7 1184 aa16.45■□□□□ 0.22
Pcif1-201ENSMUST00000041643 Clstn2Q9ER65 966 aa16.45■□□□□ 0.22
Pcif1-201ENSMUST00000041643 Nlrp6Q91WS2 869 aa16.4■□□□□ 0.22
Pcif1-201ENSMUST00000041643 Baz1bQ9Z277 1479 aa16.39■□□□□ 0.21
Pcif1-201ENSMUST00000041643 Safb2Q80YR5 991 aaKnown RBP16.35■□□□□ 0.21
Pcif1-201ENSMUST00000041643 Sall2Q9QX96 1004 aa16.35■□□□□ 0.21
Pcif1-201ENSMUST00000041643 Rpap1Q80TE0 1409 aa16.34■□□□□ 0.21
Pcif1-201ENSMUST00000041643 Kif27Q7M6Z4 1394 aa16.31■□□□□ 0.2
Pcif1-201ENSMUST00000041643 AknaQ80VW7 1404 aa16.3■□□□□ 0.2
Pcif1-201ENSMUST00000041643 Mtus2Q3UHD3 1353 aa16.3■□□□□ 0.2
Pcif1-201ENSMUST00000041643 Aebp1Q640N1 1128 aa16.27■□□□□ 0.2
Pcif1-201ENSMUST00000041643 Rgl3Q3UYI5 709 aa16.27■□□□□ 0.2
Pcif1-201ENSMUST00000041643 Rapgef2Q8CHG7 1496 aa16.27■□□□□ 0.19
Pcif1-201ENSMUST00000041643 Rrp7aQ9D1C9 280 aaKnown RBP16.25■□□□□ 0.19
Pcif1-201ENSMUST00000041643 Cc2d2aQ8CFW7 1633 aa16.23■□□□□ 0.19
Pcif1-201ENSMUST00000041643 LrpprcQ6PB66 1392 aaKnown RBP16.23■□□□□ 0.19
Pcif1-201ENSMUST00000041643 P3h3Q8CG70 732 aa16.22■□□□□ 0.19
Pcif1-201ENSMUST00000041643 Mia2Q91ZV0 1396 aa16.19■□□□□ 0.18
Pcif1-201ENSMUST00000041643 Carmil1Q6EDY6 1374 aa16.19■□□□□ 0.18
Pcif1-201ENSMUST00000041643 Dhx29Q6PGC1 1365 aaKnown RBP16.18■□□□□ 0.18
Pcif1-201ENSMUST00000041643 BicraF8VPZ9 1578 aa16.16■□□□□ 0.18
Pcif1-201ENSMUST00000041643 CntlnA2AM05 1397 aa16.15■□□□□ 0.18
Pcif1-201ENSMUST00000041643 Polr3glQ8R0C0 218 aa16.15■□□□□ 0.18
Pcif1-201ENSMUST00000041643 Fyco1Q8VDC1 1437 aa16.14■□□□□ 0.17
Pcif1-201ENSMUST00000041643 Grwd1Q810D6 446 aaKnown RBP16.12■□□□□ 0.17
Pcif1-201ENSMUST00000041643 Ppp1r18Q8BQ30 594 aa16.12■□□□□ 0.17
Pcif1-201ENSMUST00000041643 Arid3cA6PWV5 409 aa16.09■□□□□ 0.17
Pcif1-201ENSMUST00000041643 Kdm2aP59997 1161 aa16.09■□□□□ 0.17
Pcif1-201ENSMUST00000041643 Mroh3A0A1D5RM54 893 aa16.09■□□□□ 0.17
Pcif1-201ENSMUST00000041643 Arhgap35Q91YM2 1499 aa16.07■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Aebp2Q9Z248 504 aaKnown RBP16.06■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Srpk2O54781 681 aaKnown RBP16.05■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Stk24Q99KH8 431 aa16.05■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Mrs2Q5NCE8 434 aa16.03■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Card11Q8CIS0 1159 aa16.03■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Frmpd1A2AKB4 1549 aa16.03■□□□□ 0.16
Pcif1-201ENSMUST00000041643 IqubQ8CDK3 788 aa16.02■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Dhx57Q6P5D3 1388 aaKnown RBP16.02■□□□□ 0.16
Pcif1-201ENSMUST00000041643 Top2aQ01320 1528 aaKnown RBP16.01■□□□□ 0.15
Pcif1-201ENSMUST00000041643 Gm20521D3Z5F7 333 aa16.01■□□□□ 0.15
Pcif1-201ENSMUST00000041643 Rad21Q61550 635 aaKnown RBP16■□□□□ 0.15
Pcif1-201ENSMUST00000041643 Map4P27546 1125 aaKnown RBP15.99■□□□□ 0.15
Pcif1-201ENSMUST00000041643 Shroom4Q1W617 1475 aa15.99■□□□□ 0.15
Pcif1-201ENSMUST00000041643 Cabp1Q9JLK7 227 aa15.99■□□□□ 0.15
Pcif1-201ENSMUST00000041643 Hspa5P20029 655 aaKnown RBP15.98■□□□□ 0.15
Pcif1-201ENSMUST00000041643 MyclP10166 368 aa15.96■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Pkd2O35245 966 aa15.94■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Ccnb3Q810T2 1396 aa15.94■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Lemd3Q9WU40 921 aa15.93■□□□□ 0.14
Pcif1-201ENSMUST00000041643 WrnO09053 1401 aa15.93■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Efcab5A0JP43 1406 aa15.93■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Rangap1P46061 589 aaKnown RBP15.92■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Csrnp3P59055 597 aa15.92■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Plekhh2Q8C115 1491 aa15.92■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Urb2E9Q7L1 1524 aaKnown RBP15.92■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Rad54l2Q99NG0 1466 aa15.92■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Cwc22Q8C5N3 908 aaKnown RBP15.92■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Wdr62Q3U3T8 1523 aa15.91■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Mrc2Q64449 1479 aa15.9■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Duox2A2AQ99 1517 aa15.89■□□□□ 0.14
Pcif1-201ENSMUST00000041643 Mphosph9A6H5Y1 991 aa15.89■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Stag3O70576 1240 aa15.89■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Amer1Q7TS75 1132 aa15.88■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Exosc9Q9JHI7 438 aaKnown RBP15.88■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Trak1Q6PD31 939 aa15.88■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Anp32aO35381 247 aa15.87■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Anks4bQ8K3X6 423 aa15.87■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Polr1aO35134 1717 aaKnown RBP15.86■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Grin2bQ01097 1482 aa15.86■□□□□ 0.13
Pcif1-201ENSMUST00000041643 NrkQ9R0G8 1455 aa15.86■□□□□ 0.13
Pcif1-201ENSMUST00000041643 4933416C03RikQ3V063 378 aa15.85■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Pabpn1Q8CCS6 302 aaKnown RBP15.85■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Nup155Q99P88 1391 aaKnown RBP15.84■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Upf2A2AT37 1269 aaKnown RBP15.84■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Top2bQ64511 1612 aa15.84■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Soga1E1U8D0 1418 aa15.83■□□□□ 0.13
Pcif1-201ENSMUST00000041643 Ncoa2Q61026 1462 aa15.83■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Gm38655A0A286YDK6 273 aa15.82■□□□□ 0.12
Pcif1-201ENSMUST00000041643 PogzQ8BZH4 1409 aaKnown RBP15.81■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Calr4Q3TQS0 420 aa15.81■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Jph4Q80WT0 628 aa15.8■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Sart1Q9Z315 806 aaKnown RBP15.8■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Rundc1Q0VDN7 615 aa15.79■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Ifit1bl1D3Z6F0 470 aa15.79■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Kif3bQ61771 747 aa15.79■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Cc2d2bA0A286YDU8 1405 aa15.78■□□□□ 0.12
Pcif1-201ENSMUST00000041643 NgefQ8CHT1 710 aa15.78■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Cux1P53564 1515 aa15.77■□□□□ 0.12
Pcif1-201ENSMUST00000041643 Cnga1P29974 684 aa15.77■□□□□ 0.11
Pcif1-201ENSMUST00000041643 UacaQ8CGB3 1411 aa15.77■□□□□ 0.11
Pcif1-201ENSMUST00000041643 Trim26Q99PN3 545 aa15.76■□□□□ 0.11
Pcif1-201ENSMUST00000041643 Camsap1A2AHC3 1581 aa15.75■□□□□ 0.11
Pcif1-201ENSMUST00000041643 Lamc3Q9R0B6 1581 aa15.72■□□□□ 0.11
Pcif1-201ENSMUST00000041643 Ofd1Q80Z25 1017 aa15.72■□□□□ 0.11
Pcif1-201ENSMUST00000041643 DiexfQ8BTT6 772 aaKnown RBP15.71■□□□□ 0.11
Pcif1-201ENSMUST00000041643 Stk26Q99JT2 416 aa15.7■□□□□ 0.1
Pcif1-201ENSMUST00000041643 Gm7298A0A0N4SVU1 1476 aa15.7■□□□□ 0.1
Retrieved 100 of 22,080 RNA–protein pairs in 48 ms