RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 GNLYP22749 145 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 RUSC1-AS1Q66K80 236 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 LINC00308Q8TCZ7 52 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 Q9H8V8 135 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 PRB3Q04118 309 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-216ENST00000637968 C15orf32Q32M92 178 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 COX8CQ7Z4L0 72 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 RBM12B-AS1Q9P1G2 102 aa4.28□□□□□ -1.72
SCN1A-216ENST00000637968 A0A087WWL8 130 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 TEX22C9J3V5 150 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 PSPHP1O15172 72 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 CACNA1AO00555 2505 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 FAM208BQ5VWN6 2430 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3OR16-13A0A075B7E8 117 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3OR16-10A0A075B7F0 116 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3-74A0A0B4J1X5 117 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 TET2Q6N021 2002 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-216ENST00000637968 TECTAO75443 2155 aa4.27□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV4-4A0A075B6R2 117 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3OR16-8A0A075B7F1 116 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 LINC00158P58513 81 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 OPRPNQ99935 248 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-216ENST00000637968 C16orf95Q9H693 158 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 ZNRD1Q9P1U0 126 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 PTPRQQ9UMZ3 2332 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3-66A0A0C4DH42 116 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 RFPL3SP0C7P2 107 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 ZNF503-AS2A6NEH8 195 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 PRYO14603 147 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3-23P01764 117 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 PRB1P04280 392 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 MED13Q9UHV7 2174 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 SUMO4Q6EEV6 95 aa4.26□□□□□ -1.73
SCN1A-216ENST00000637968 CHKB-CPT1BH3BT56 60 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 NREPQ16612 68 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 IGFL2Q6UWQ7 119 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 C1orf229Q6ZS94 237 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-216ENST00000637968 Q8N6K4 173 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 TMEM254Q8TBM7 123 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 I3L2K1 104 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 CCL3L1P16619 93 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 BPESC1Q9GZL8 116 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 EIF4EBP3O60516 100 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-216ENST00000637968 MED14OSP0DP75 135 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 B3GALT5-AS1P59052 145 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 CD164L2Q6UWJ8 174 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 C20orf203Q8NBC4 194 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3-49A0A0A0MS15 119 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV7-4-1A0A0J9YVY3 117 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 OVOL3O00110 214 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 AVPP01185 164 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 IGFL3Q6UXB1 125 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 C9orf106Q8NAJ2 232 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 AMELXQ99217 191 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 LENEPQ9Y5L5 61 aa4.25□□□□□ -1.73
SCN1A-216ENST00000637968 CEP192Q8TEP8 1941 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV3OR16-12A0A075B7B8 117 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 LRCOL1A6NCL2 159 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 TOMM7Q9P0U1 55 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 IGKV3OR2-268A0A0C4DH90 116 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 NDUFA1O15239 70 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 MIR7-3HGQ8N6C7 128 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 SND1-IT1Q9HBX3 110 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 EPM2AB3EWF7 344 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 PRAC2D3DTV9 90 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 IGKV3-20P01619 116 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 LYPD5Q6UWN5 251 aa4.24□□□□□ -1.73
SCN1A-216ENST00000637968 PKDREJQ9NTG1 2253 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 TSHBP01222 138 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 BSPH1Q075Z2 132 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 RNASE13Q5GAN3 156 aaKnown RBP4.23□□□□□ -1.73
SCN1A-216ENST00000637968 PSMG3-AS1Q96PY0 264 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 COL4A6Q14031 1691 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 IGLV4-3A0A075B6K6 122 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 ZNF73O43830 326 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-216ENST00000637968 ADORA2A-AS1P86434 159 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 Q6ZVQ6 151 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 DPM3Q9P2X0 92 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV1-18A0A0C4DH31 117 aa4.23□□□□□ -1.73
SCN1A-216ENST00000637968 POLR2KP53803 58 aaKnown RBP4.23□□□□□ -1.73
SCN1A-216ENST00000637968 K7EIM0 57 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 FAM19A3Q7Z5A8 133 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 C11orf45Q8TAV5 145 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 UBE2E2Q96LR5 201 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 A6NED7 52 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 PDE6GP18545 87 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 NOTCH4Q99466 2003 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 IGHV4OR15-8A0A075B7B6 117 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 A0A087WW49 117 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 IGLV2-23P01705 113 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 SLPIP03973 132 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 Q8N3U1 123 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 GAFA1Q96PS6 74 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 RNF5Q99942 180 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 C11orf21Q9P2W6 132 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 ARHGAP32A7KAX9 2087 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 Q0VFX4 171 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 VMO1Q7Z5L0 202 aa4.22□□□□□ -1.73
SCN1A-216ENST00000637968 GNRH2O43555 120 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 IGHV1-2P23083 117 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms