RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TMEM263Q8WUH6 116 aaKnown RBP13.29□□□□□ -0.28
CLN3-263ENST00000637871 NBEAL1Q6ZS30 2694 aa13.29□□□□□ -0.28
CLN3-263ENST00000637871 E9PLD3 99 aa13.28□□□□□ -0.28
CLN3-263ENST00000637871 CST9LQ9H4G1 147 aa13.28□□□□□ -0.28
CLN3-263ENST00000637871 NOTCH1P46531 2555 aa13.28□□□□□ -0.28
CLN3-263ENST00000637871 OR11H2Q8NH07 326 aa13.28□□□□□ -0.28
CLN3-263ENST00000637871 IGKV2D-26A0A0A0MRZ7 120 aa13.27□□□□□ -0.29
CLN3-263ENST00000637871 RNASE8Q8TDE3 154 aaKnown RBP13.27□□□□□ -0.29
CLN3-263ENST00000637871 C19orf73Q9NVV2 129 aa13.27□□□□□ -0.29
CLN3-263ENST00000637871 DAZ2Q13117 558 aaKnown RBP13.26□□□□□ -0.29
CLN3-263ENST00000637871 DNAH3Q8TD57 4116 aa13.25□□□□□ -0.29
CLN3-263ENST00000637871 P0DMU3 169 aa13.25□□□□□ -0.29
CLN3-263ENST00000637871 FAM231AP0DMU4 169 aa13.25□□□□□ -0.29
CLN3-263ENST00000637871 FAM231CP0DMU5 169 aa13.25□□□□□ -0.29
CLN3-263ENST00000637871 C16orf74Q96GX8 76 aa13.25□□□□□ -0.29
CLN3-263ENST00000637871 TP73-AS1Q9UF72 201 aa13.25□□□□□ -0.29
CLN3-263ENST00000637871 TRBV25-1A0A075B6N4 114 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 TRBV10-1A0A0K0K1A3 114 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 RPL39P62891 51 aaKnown RBP13.24□□□□□ -0.29
CLN3-263ENST00000637871 C9orf66Q5T8R8 295 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 C11orf86A6NJI1 115 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 AZU1P20160 251 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 SAMD5Q5TGI4 173 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 NFE4Q86UQ8 179 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 OR4C5Q8NGB2 326 aa13.24□□□□□ -0.29
CLN3-263ENST00000637871 MRPL16Q9NX20 251 aaKnown RBP13.24□□□□□ -0.29
CLN3-263ENST00000637871 TRAV4A0A0B4J268 109 aa13.23□□□□□ -0.29
CLN3-263ENST00000637871 H3BRM9 83 aa13.23□□□□□ -0.29
CLN3-263ENST00000637871 TAX1BP3O14907 124 aa13.23□□□□□ -0.29
CLN3-263ENST00000637871 CHAC1Q9BUX1 264 aa13.23□□□□□ -0.29
CLN3-263ENST00000637871 IGLV4-69A0A075B6H9 119 aa13.22□□□□□ -0.29
CLN3-263ENST00000637871 MYMXA0A1B0GTQ4 84 aa13.22□□□□□ -0.29
CLN3-263ENST00000637871 VCX2Q9H322 139 aa13.22□□□□□ -0.29
CLN3-263ENST00000637871 SPANXA1Q9NS26 97 aa13.22□□□□□ -0.29
CLN3-263ENST00000637871 IGHV3-73A0A0B4J1V6 119 aa13.21□□□□□ -0.29
CLN3-263ENST00000637871 TRAV8-6A0A0B4J262 113 aa13.21□□□□□ -0.29
CLN3-263ENST00000637871 KRTAP10-11P60412 298 aa13.21□□□□□ -0.29
CLN3-263ENST00000637871 TM2D2Q9BX73 214 aa13.21□□□□□ -0.29
CLN3-263ENST00000637871 IGHV3OR16-12A0A075B7B8 117 aa13.21□□□□□ -0.3
CLN3-263ENST00000637871 SMAGPQ0VAQ4 97 aa13.21□□□□□ -0.3
CLN3-263ENST00000637871 COTL1Q14019 142 aa13.21□□□□□ -0.3
CLN3-263ENST00000637871 OVOL2Q9BRP0 275 aa13.21□□□□□ -0.3
CLN3-263ENST00000637871 TRGV1A0A0A0MS02 117 aa13.2□□□□□ -0.3
CLN3-263ENST00000637871 PRB2P02812 416 aaPredicted RBP13.2□□□□□ -0.3
CLN3-263ENST00000637871 GIG44P09565 113 aaPredicted RBP13.2□□□□□ -0.3
CLN3-263ENST00000637871 TCTAP57738 103 aa13.2□□□□□ -0.3
CLN3-263ENST00000637871 PRADC1Q9BSG0 188 aa13.2□□□□□ -0.3
CLN3-263ENST00000637871 PRM2P04554 102 aa13.19□□□□□ -0.3
CLN3-263ENST00000637871 UBE2V1Q13404 147 aa13.19□□□□□ -0.3
CLN3-263ENST00000637871 RRN3P1Q2M238 152 aa13.19□□□□□ -0.3
CLN3-263ENST00000637871 IGLV4-3A0A075B6K6 122 aa13.18□□□□□ -0.3
CLN3-263ENST00000637871 WIPF1O43516 503 aa13.18□□□□□ -0.3
CLN3-263ENST00000637871 RPL36AP83881 106 aaKnown RBP13.18□□□□□ -0.3
CLN3-263ENST00000637871 CSNK1G2-AS1Q8NCQ2 148 aa13.18□□□□□ -0.3
CLN3-263ENST00000637871 RPL36ALQ969Q0 106 aaKnown RBP13.18□□□□□ -0.3
CLN3-263ENST00000637871 AMELXQ99217 191 aa13.18□□□□□ -0.3
CLN3-263ENST00000637871 TIMM21Q9BVV7 248 aa13.18□□□□□ -0.3
CLN3-263ENST00000637871 Q6ZSN1 163 aa13.17□□□□□ -0.3
CLN3-263ENST00000637871 CEND1Q8N111 149 aa13.17□□□□□ -0.3
CLN3-263ENST00000637871 MAPKAPK5-AS1Q8N8E1 139 aa13.17□□□□□ -0.3
CLN3-263ENST00000637871 TRBV7-3A0A075B6L6 115 aa13.17□□□□□ -0.3
CLN3-263ENST00000637871 DAZ4Q86SG3 579 aaKnown RBP13.17□□□□□ -0.3
CLN3-263ENST00000637871 DAZ3Q9NR90 486 aaKnown RBP13.17□□□□□ -0.3
CLN3-263ENST00000637871 SMIM13P0DJ93 91 aa13.16□□□□□ -0.3
CLN3-263ENST00000637871 VAMP3Q15836 100 aa13.16□□□□□ -0.3
CLN3-263ENST00000637871 C9orf118A6NHY6 69 aa13.15□□□□□ -0.3
CLN3-263ENST00000637871 K7EQD1 137 aa13.15□□□□□ -0.3
CLN3-263ENST00000637871 RPL35AP18077 110 aaKnown RBP13.15□□□□□ -0.3
CLN3-263ENST00000637871 PTTG1IPP53801 180 aa13.15□□□□□ -0.3
CLN3-263ENST00000637871 MRPS36P82909 103 aaKnown RBP13.15□□□□□ -0.3
CLN3-263ENST00000637871 EGFEM1PQ0D2K5 195 aa13.15□□□□□ -0.3
CLN3-263ENST00000637871 TMEM170BQ5T4T1 132 aa13.15□□□□□ -0.3
CLN3-263ENST00000637871 CHCHD7Q9BUK0 85 aa13.15□□□□□ -0.3
CLN3-263ENST00000637871 MEGF8Q7Z7M0 2845 aa13.15□□□□□ -0.3
CLN3-263ENST00000637871 GCSHP23434 173 aa13.14□□□□□ -0.31
CLN3-263ENST00000637871 TTTY13Q9BZ97 58 aa13.14□□□□□ -0.31
CLN3-263ENST00000637871 SMIM9A6NGZ8 99 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 ZNF815PA8K554 130 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 PLEKHB2Q96CS7 222 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 LEPROTO15243 131 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 KPRPQ5T749 579 aaPredicted RBP13.13□□□□□ -0.31
CLN3-263ENST00000637871 Q6ZTI0 123 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 ZNRF2Q8NHG8 242 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 HIST1H4GQ99525 98 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 NOP10Q9NPE3 64 aaKnown RBP13.13□□□□□ -0.31
CLN3-263ENST00000637871 UBE2D4Q9Y2X8 147 aa13.13□□□□□ -0.31
CLN3-263ENST00000637871 TRBV6-4A0A1B0GX49 114 aa13.12□□□□□ -0.31
CLN3-263ENST00000637871 TMEM223A0PJW6 202 aa13.11□□□□□ -0.31
CLN3-263ENST00000637871 PLAC8L1A1L4L8 177 aa13.11□□□□□ -0.31
CLN3-263ENST00000637871 DEFB104AQ8WTQ1 72 aa13.11□□□□□ -0.31
CLN3-263ENST00000637871 ZNF479Q96JC4 524 aa13.11□□□□□ -0.31
CLN3-263ENST00000637871 CSDC2Q9Y534 153 aaKnown RBP13.11□□□□□ -0.31
CLN3-263ENST00000637871 NACAE9PAV3 2078 aa13.11□□□□□ -0.31
CLN3-263ENST00000637871 TMEM238LA0A1B0GVL6 79 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 A6NJY4 79 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 SCGB1D4Q6XE38 83 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 WFDC10AQ9H1F0 79 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 GTSF1LQ9H1H1 148 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 TRGV2A0A075B6R0 118 aa13.1□□□□□ -0.31
CLN3-263ENST00000637871 TINCRA0A1B0GVN0 87 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms