RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 RHOHQ15669 191 aa12.99□□□□□ -0.33
CLN3-254ENST00000637050 ZNRF2Q8NHG8 242 aa12.99□□□□□ -0.33
CLN3-254ENST00000637050 RPL36ALQ969Q0 106 aaKnown RBP12.99□□□□□ -0.33
CLN3-254ENST00000637050 HHLA3Q9XRX5 114 aa12.99□□□□□ -0.33
CLN3-254ENST00000637050 TSHBP01222 138 aa12.98□□□□□ -0.33
CLN3-254ENST00000637050 LINC00173Q6ZV60 143 aa12.98□□□□□ -0.33
CLN3-254ENST00000637050 NUDT3O95989 172 aa12.97□□□□□ -0.33
CLN3-254ENST00000637050 ATP5G1P05496 136 aa12.97□□□□□ -0.33
CLN3-254ENST00000637050 PRADC1Q9BSG0 188 aa12.97□□□□□ -0.33
CLN3-254ENST00000637050 HSPB8Q9UJY1 196 aa12.97□□□□□ -0.33
CLN3-254ENST00000637050 CHTOPQ9Y3Y2 248 aaKnown RBP12.97□□□□□ -0.33
CLN3-254ENST00000637050 C3orf79P0CE67 100 aa12.96□□□□□ -0.33
CLN3-254ENST00000637050 CRYBA4P53673 196 aa12.96□□□□□ -0.33
CLN3-254ENST00000637050 DEFB104AQ8WTQ1 72 aa12.96□□□□□ -0.33
CLN3-254ENST00000637050 PRO0255Q9UI72 69 aa12.96□□□□□ -0.33
CLN3-254ENST00000637050 A0A0J9YWU9 116 aa12.96□□□□□ -0.34
CLN3-254ENST00000637050 LOC100131303A0A0U1RQF7 123 aa12.96□□□□□ -0.34
CLN3-254ENST00000637050 UBE2D3P61077 147 aa12.96□□□□□ -0.34
CLN3-254ENST00000637050 UBE2D2P62837 147 aa12.96□□□□□ -0.34
CLN3-254ENST00000637050 C12orf74Q32Q52 190 aa12.96□□□□□ -0.34
CLN3-254ENST00000637050 GAGE12JA6NER3 117 aa12.95□□□□□ -0.34
CLN3-254ENST00000637050 KRTDAPP60985 99 aa12.95□□□□□ -0.34
CLN3-254ENST00000637050 GAGE4Q13068 117 aa12.95□□□□□ -0.34
CLN3-254ENST00000637050 GAGE5Q13069 117 aa12.95□□□□□ -0.34
CLN3-254ENST00000637050 GAGE13Q4V321 117 aa12.95□□□□□ -0.34
CLN3-254ENST00000637050 TOMM6Q96B49 74 aa12.95□□□□□ -0.34
CLN3-254ENST00000637050 DAZ4Q86SG3 579 aaKnown RBP12.94□□□□□ -0.34
CLN3-254ENST00000637050 PHLDA1Q8WV24 401 aaPredicted RBP12.94□□□□□ -0.34
CLN3-254ENST00000637050 DAZ3Q9NR90 486 aaKnown RBP12.94□□□□□ -0.34
CLN3-254ENST00000637050 IGHV3-38A0A0C4DH36 116 aa12.93□□□□□ -0.34
CLN3-254ENST00000637050 TMEM238LA0A1B0GVL6 79 aa12.93□□□□□ -0.34
CLN3-254ENST00000637050 LINC00694P0DN24 101 aa12.93□□□□□ -0.34
CLN3-254ENST00000637050 C2orf66Q6UXQ4 117 aa12.93□□□□□ -0.34
CLN3-254ENST00000637050 B9D2Q9BPU9 175 aa12.93□□□□□ -0.34
CLN3-254ENST00000637050 ZMAT4Q9H898 229 aa12.93□□□□□ -0.34
CLN3-254ENST00000637050 NPSP0C0P6 89 aa12.92□□□□□ -0.34
CLN3-254ENST00000637050 IFI27L1Q96BM0 104 aa12.92□□□□□ -0.34
CLN3-254ENST00000637050 MAP1LC3CQ9BXW4 147 aa12.92□□□□□ -0.34
CLN3-254ENST00000637050 CYSLTR1Q9Y271 337 aa12.92□□□□□ -0.34
CLN3-254ENST00000637050 LINC01549A6NIU2 74 aa12.91□□□□□ -0.34
CLN3-254ENST00000637050 SYS1-DBNDD2H3BUS1 97 aa12.91□□□□□ -0.34
CLN3-254ENST00000637050 PAX4O43316 350 aa12.91□□□□□ -0.34
CLN3-254ENST00000637050 COL5A1-AS1Q5SY13 56 aa12.91□□□□□ -0.34
CLN3-254ENST00000637050 VSIG2Q96IQ7 327 aa12.91□□□□□ -0.34
CLN3-254ENST00000637050 F5H768 121 aa12.9□□□□□ -0.34
CLN3-254ENST00000637050 ATP5LO75964 103 aa12.9□□□□□ -0.34
CLN3-254ENST00000637050 GYPEP15421 78 aa12.9□□□□□ -0.34
CLN3-254ENST00000637050 Q8N976 141 aa12.9□□□□□ -0.34
CLN3-254ENST00000637050 C20orf203Q8NBC4 194 aa12.9□□□□□ -0.34
CLN3-254ENST00000637050 DNHD1Q96M86 4753 aa12.9□□□□□ -0.34
CLN3-254ENST00000637050 HSBP1L1C9JCN9 74 aa12.89□□□□□ -0.35
CLN3-254ENST00000637050 CHCHD7Q9BUK0 85 aa12.89□□□□□ -0.35
CLN3-254ENST00000637050 SCGB1D1O95968 90 aa12.89□□□□□ -0.35
CLN3-254ENST00000637050 HTN3P15516 51 aa12.89□□□□□ -0.35
CLN3-254ENST00000637050 RPL39P62891 51 aaKnown RBP12.89□□□□□ -0.35
CLN3-254ENST00000637050 SPATA12Q7Z6I5 190 aa12.89□□□□□ -0.35
CLN3-254ENST00000637050 C11orf45Q8TAV5 145 aa12.89□□□□□ -0.35
CLN3-254ENST00000637050 SCGB3A1Q96QR1 104 aa12.89□□□□□ -0.35
CLN3-254ENST00000637050 PET117Q6UWS5 81 aa12.88□□□□□ -0.35
CLN3-254ENST00000637050 Q6ZTC4 211 aa12.88□□□□□ -0.35
CLN3-254ENST00000637050 ERASQ7Z444 233 aa12.88□□□□□ -0.35
CLN3-254ENST00000637050 GTSF1LQ9H1H1 148 aa12.88□□□□□ -0.35
CLN3-254ENST00000637050 TENM3Q9P273 2699 aa12.88□□□□□ -0.35
CLN3-254ENST00000637050 TRAV26-1A0A087WT03 109 aa12.87□□□□□ -0.35
CLN3-254ENST00000637050 K7EP13 123 aa12.87□□□□□ -0.35
CLN3-254ENST00000637050 NTM-AS1Q6ZSK4 140 aa12.87□□□□□ -0.35
CLN3-254ENST00000637050 A0A0J9YY99 117 aa12.86□□□□□ -0.35
CLN3-254ENST00000637050 IGIPA6NJ69 53 aa12.86□□□□□ -0.35
CLN3-254ENST00000637050 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.86□□□□□ -0.35
CLN3-254ENST00000637050 NANOS2P60321 138 aaKnown RBP12.86□□□□□ -0.35
CLN3-254ENST00000637050 RBX1P62877 108 aa12.86□□□□□ -0.35
CLN3-254ENST00000637050 C20orf202A1L168 122 aa12.86□□□□□ -0.35
CLN3-254ENST00000637050 ATP6V0E2Q8NHE4 81 aa12.85□□□□□ -0.35
CLN3-254ENST00000637050 TIMM17AQ99595 171 aa12.85□□□□□ -0.35
CLN3-254ENST00000637050 MIEN1Q9BRT3 115 aa12.85□□□□□ -0.35
CLN3-254ENST00000637050 H0Y8G0 127 aa12.84□□□□□ -0.35
CLN3-254ENST00000637050 LINC01545Q5VT33 79 aa12.84□□□□□ -0.35
CLN3-254ENST00000637050 ORAOV1Q8WV07 137 aa12.84□□□□□ -0.35
CLN3-254ENST00000637050 TMEM141Q96I45 108 aa12.84□□□□□ -0.35
CLN3-254ENST00000637050 PRSS1P07477 247 aa12.83□□□□□ -0.35
CLN3-254ENST00000637050 H3BNG1 76 aa12.83□□□□□ -0.36
CLN3-254ENST00000637050 TMEM97Q5BJF2 176 aa12.83□□□□□ -0.36
CLN3-254ENST00000637050 Q6ZN92 141 aa12.83□□□□□ -0.36
CLN3-254ENST00000637050 PYGO1Q9Y3Y4 419 aa12.83□□□□□ -0.36
CLN3-254ENST00000637050 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.82□□□□□ -0.36
CLN3-254ENST00000637050 IGKV2-29A2NJV5 120 aaPredicted RBP12.82□□□□□ -0.36
CLN3-254ENST00000637050 LGALS9CQ6DKI2 356 aa12.82□□□□□ -0.36
CLN3-254ENST00000637050 TRBV6-8A0A0A6YYG3 113 aa12.81□□□□□ -0.36
CLN3-254ENST00000637050 MRPL23Q16540 153 aaKnown RBP12.81□□□□□ -0.36
CLN3-254ENST00000637050 BAALCQ8WXS3 180 aa12.81□□□□□ -0.36
CLN3-254ENST00000637050 UBE2D4Q9Y2X8 147 aa12.81□□□□□ -0.36
CLN3-254ENST00000637050 TRBV25-1A0A075B6N4 114 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 DEFB131BA0A096LNP1 70 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 NHLRC4P0CG21 123 aaPredicted RBP12.8□□□□□ -0.36
CLN3-254ENST00000637050 TEX43Q6ZNM6 134 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 TMEM243Q9BU79 118 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 SPANXA1Q9NS26 97 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 ICOSQ9Y6W8 199 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 TRAV12-1A0A0B4J245 112 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 ODF1Q14990 250 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms