RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 SLC25A6P12236 298 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 MT1GP13640 62 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 MRPS15P82914 257 aaKnown RBP-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 HSD17B12Q53GQ0 312 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 C20orf197Q8N268 126 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 THEM6Q8WUY1 208 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 IFI27L1Q96BM0 104 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 SLC35B3Q9H1N7 401 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 SYNMO15061 1565 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 HTTP42858 3142 aa-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 SPTAN1Q13813 2472 aaKnown RBP-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 ZNF142P52746 1687 aaPredicted RBP-0.84□□□□□ -2.54
SCN1A-208ENST00000625916 KIF13AQ9H1H9 1805 aa-0.85□□□□□ -2.54
SCN1A-208ENST00000625916 DNAH17Q9UFH2 4485 aa-0.85□□□□□ -2.54
SCN1A-208ENST00000625916 TRGV1A0A0A0MS02 117 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 A0A1W2PRE2 83 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 PLXNA2O75051 1894 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 TCRAP04437 139 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 POLR2HP52434 150 aaKnown RBP-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 PSPHP78330 225 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 MT1XP80297 61 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 FER1L6Q2WGJ9 1857 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 TMEM78Q5T7P6 136 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 HOPXQ9BPY8 73 aaPredicted RBP-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 BOLA2Q9H3K6 86 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 ERG28Q9UKR5 140 aa-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 RANBP2P49792 3224 aaKnown RBP-0.85□□□□□ -2.55
SCN1A-208ENST00000625916 G3V318 75 aa-0.86□□□□□ -2.55
SCN1A-208ENST00000625916 K7EQZ3 153 aa-0.86□□□□□ -2.55
SCN1A-208ENST00000625916 MT1HP80294 61 aa-0.86□□□□□ -2.55
SCN1A-208ENST00000625916 TRIQKQ629K1 86 aa-0.86□□□□□ -2.55
SCN1A-208ENST00000625916 DYNLRB2Q8TF09 96 aa-0.86□□□□□ -2.55
SCN1A-208ENST00000625916 GOLGA3Q08378 1498 aa-0.86□□□□□ -2.55
SCN1A-208ENST00000625916 ARHGAP31Q2M1Z3 1444 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 SMG6Q86US8 1419 aaKnown RBP-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 CASZ1Q86V15 1759 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 TRBV10-3A0A0K0K1G6 114 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 NPC2P61916 151 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 SNX29P2Q8IUI4 249 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 MNS1Q8NEH6 495 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 GID8Q9NWU2 228 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 MED23Q9ULK4 1368 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 USP34Q70CQ2 3546 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 ARAP1Q96P48 1450 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 PHIPQ8WWQ0 1821 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 SYNJ1O43426 1573 aa-0.87□□□□□ -2.55
SCN1A-208ENST00000625916 KIAA0100Q14667 2235 aaKnown RBP-0.88□□□□□ -2.55
SCN1A-208ENST00000625916 LOC730098B7Z3J9 87 aa-0.88□□□□□ -2.55
SCN1A-208ENST00000625916 PIN1P1O15428 100 aa-0.88□□□□□ -2.55
SCN1A-208ENST00000625916 RPL7P18124 248 aaKnown RBP-0.88□□□□□ -2.55
SCN1A-208ENST00000625916 CCDC115Q96NT0 180 aa-0.88□□□□□ -2.55
SCN1A-208ENST00000625916 NOP16Q9Y3C1 178 aaKnown RBP-0.88□□□□□ -2.55
SCN1A-208ENST00000625916 FRYLO94915 3013 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 DNAH9Q9NYC9 4486 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 BORCS7-ASMTA0A0B4J1R7 106 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 TRAV12-3A0A0B4J271 114 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 H0YAA0 97 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 RBP4P02753 201 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 ATP6V0E2Q8NHE4 81 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 ATPIF1Q9UII2 106 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 ROCK1Q13464 1354 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 PTPRMP28827 1452 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 KDM5CP41229 1560 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 CEP250Q9BV73 2442 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 ARFGEF1Q9Y6D6 1849 aa-0.89□□□□□ -2.55
SCN1A-208ENST00000625916 VPS13CQ709C8 3753 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 DNAH14Q0VDD8 3507 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 UHRF1BP1LA0JNW5 1464 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 BCL9LQ86UU0 1499 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 TRAV1-2A0A0B4J238 106 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 TMEM238C9JI98 176 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 CCDC179H3BU77 68 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 HAMPP81172 84 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 TMEM91Q6ZNR0 172 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 OR9Q1Q8NGQ5 310 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 CALML5Q9NZT1 146 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 SPCS1Q9Y6A9 102 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 PLXNB2O15031 1838 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 PARP14Q460N5 1801 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 ZNF609O15014 1411 aa-0.9□□□□□ -2.55
SCN1A-208ENST00000625916 CDH23Q9H251 3354 aa-0.91□□□□□ -2.55
SCN1A-208ENST00000625916 DNAH12Q6ZR08 3092 aa-0.91□□□□□ -2.55
SCN1A-208ENST00000625916 DNAH10Q8IVF4 4471 aa-0.91□□□□□ -2.55
SCN1A-208ENST00000625916 M0R2T5 61 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 BCE1O60756 84 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 E2F6O75461 281 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 DNAJC15Q9Y5T4 150 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 ZMYM4Q5VZL5 1548 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 ASXL1Q8IXJ9 1541 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 DMDP11532 3685 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 C10orf71Q711Q0 1435 aa-0.91□□□□□ -2.56
SCN1A-208ENST00000625916 NRXN2Q9P2S2 1712 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 FXYD6-FXYD2A0A087WZ82 144 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 J3QLW9 94 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 M0R2P5 195 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 NPFFO15130 113 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 SMIM24O75264 130 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 DPM2O94777 84 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 MT1EP04732 61 aa-0.92□□□□□ -2.56
SCN1A-208ENST00000625916 EDDM3BP56851 147 aa-0.92□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms