RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 ENHOQ6UWT2 76 aa8.99□□□□□ -0.97
LINC00540-202ENST00000616974 TRBV25-1A0A075B6N4 114 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 A0A087WX48 190 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 TSHBP01222 138 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 NPYP01303 97 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 APOC3P02656 99 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 UBE2WQ96B02 151 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 TMEM242Q9NWH2 141 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 CLRN3Q8NCR9 226 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 CHCHD7Q9BUK0 85 aa8.98□□□□□ -0.97
LINC00540-202ENST00000616974 FAT1Q14517 4588 aa8.97□□□□□ -0.97
LINC00540-202ENST00000616974 TRAV9-2A0A087WT02 112 aa8.97□□□□□ -0.97
LINC00540-202ENST00000616974 IGHV1-24A0A0C4DH33 117 aa8.97□□□□□ -0.97
LINC00540-202ENST00000616974 TRBV6-5A0A0K0K1A5 114 aa8.97□□□□□ -0.97
LINC00540-202ENST00000616974 COTL1Q14019 142 aa8.97□□□□□ -0.97
LINC00540-202ENST00000616974 C10orf126Q8N4M7 172 aa8.97□□□□□ -0.97
LINC00540-202ENST00000616974 C20orf203Q8NBC4 194 aa8.97□□□□□ -0.97
LINC00540-202ENST00000616974 ANGP03950 147 aaKnown RBP8.96□□□□□ -0.97
LINC00540-202ENST00000616974 AMTP48728 403 aa8.96□□□□□ -0.97
LINC00540-202ENST00000616974 MRAP2Q96G30 205 aa8.96□□□□□ -0.97
LINC00540-202ENST00000616974 CKS2P33552 79 aa8.96□□□□□ -0.98
LINC00540-202ENST00000616974 SPATA12Q7Z6I5 190 aa8.96□□□□□ -0.98
LINC00540-202ENST00000616974 LINC00269Q8N2A0 174 aa8.96□□□□□ -0.98
LINC00540-202ENST00000616974 ST20Q9HBF5 79 aa8.96□□□□□ -0.98
LINC00540-202ENST00000616974 RPS10P5Q9NQ39 176 aa8.96□□□□□ -0.98
LINC00540-202ENST00000616974 DNAH8Q96JB1 4490 aa8.96□□□□□ -0.98
LINC00540-202ENST00000616974 LRCOL1A6NCL2 159 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 IMMP2LQ96T52 175 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 TMEM243Q9BU79 118 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 IGLV10-54A0A075B6I4 117 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 A0A087WTM6 91 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 TNFRSF6BO95407 300 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 SUMO2P61956 95 aaKnown RBP8.95□□□□□ -0.98
LINC00540-202ENST00000616974 KIAA1644Q3SXP7 199 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 ATP5L2Q7Z4Y8 100 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 FRZBQ92765 325 aa8.95□□□□□ -0.98
LINC00540-202ENST00000616974 TRBV27A0A0K0K1C4 114 aa8.94□□□□□ -0.98
LINC00540-202ENST00000616974 I3L3M4 83 aa8.94□□□□□ -0.98
LINC00540-202ENST00000616974 PMCHP20382 165 aa8.94□□□□□ -0.98
LINC00540-202ENST00000616974 LAGE3Q14657 143 aa8.94□□□□□ -0.98
LINC00540-202ENST00000616974 TMEM136Q6ZRR5 245 aa8.94□□□□□ -0.98
LINC00540-202ENST00000616974 KCNIP4Q6PIL6 250 aa8.93□□□□□ -0.98
LINC00540-202ENST00000616974 BTF3L4Q96K17 158 aa8.93□□□□□ -0.98
LINC00540-202ENST00000616974 IGKV2D-24A0A075B6R9 120 aa8.93□□□□□ -0.98
LINC00540-202ENST00000616974 A0A1B0GW15 77 aa8.93□□□□□ -0.98
LINC00540-202ENST00000616974 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.93□□□□□ -0.98
LINC00540-202ENST00000616974 BAALCQ8WXS3 180 aa8.93□□□□□ -0.98
LINC00540-202ENST00000616974 KRTAP17-1Q9BYP8 105 aa8.93□□□□□ -0.98
LINC00540-202ENST00000616974 TRBV24-1A0A075B6N3 115 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 TGIF2-C20orf24A0A0A6YYL0 155 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 IGKV3OR2-268A0A0C4DH90 116 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 K7EP13 123 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 TCAPO15273 167 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 APCSP02743 223 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 ESDP10768 282 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 CTDSP1Q9GZU7 261 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 PSCAO43653 123 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 RNASE13Q5GAN3 156 aaKnown RBP8.92□□□□□ -0.98
LINC00540-202ENST00000616974 KRTAP26-1Q6PEX3 210 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 PRR34Q9NV39 138 aa8.92□□□□□ -0.98
LINC00540-202ENST00000616974 ABCA13Q86UQ4 5058 aa8.91□□□□□ -0.98
LINC00540-202ENST00000616974 LOC389332A0A1B0GUA5 103 aa8.91□□□□□ -0.98
LINC00540-202ENST00000616974 FGF6P10767 208 aa8.91□□□□□ -0.98
LINC00540-202ENST00000616974 BTF3P20290 206 aaKnown RBP8.91□□□□□ -0.98
LINC00540-202ENST00000616974 RPL39P62891 51 aaKnown RBP8.91□□□□□ -0.98
LINC00540-202ENST00000616974 PRELID3AQ96N28 172 aa8.91□□□□□ -0.98
LINC00540-202ENST00000616974 RHEBQ15382 184 aa8.9□□□□□ -0.98
LINC00540-202ENST00000616974 TMEM97Q5BJF2 176 aa8.9□□□□□ -0.98
LINC00540-202ENST00000616974 RNASEKQ6P5S7 137 aaKnown RBP8.9□□□□□ -0.98
LINC00540-202ENST00000616974 NFE4Q86UQ8 179 aa8.9□□□□□ -0.98
LINC00540-202ENST00000616974 TRAV8-3A0A0A6YYJ7 113 aa8.9□□□□□ -0.99
LINC00540-202ENST00000616974 UBE2L6O14933 153 aa8.9□□□□□ -0.99
LINC00540-202ENST00000616974 REG3AQ06141 175 aa8.9□□□□□ -0.99
LINC00540-202ENST00000616974 LINC01620Q4KN68 170 aa8.9□□□□□ -0.99
LINC00540-202ENST00000616974 FAM104AQ969W3 186 aa8.9□□□□□ -0.99
LINC00540-202ENST00000616974 SMIM2Q9BVW6 85 aa8.9□□□□□ -0.99
LINC00540-202ENST00000616974 ORMDL3Q8N138 153 aa8.89□□□□□ -0.99
LINC00540-202ENST00000616974 A0A1B0GUV1 79 aa8.89□□□□□ -0.99
LINC00540-202ENST00000616974 S100A8P05109 93 aa8.89□□□□□ -0.99
LINC00540-202ENST00000616974 ELOBQ15370 118 aa8.89□□□□□ -0.99
LINC00540-202ENST00000616974 OPRPNQ99935 248 aaPredicted RBP8.89□□□□□ -0.99
LINC00540-202ENST00000616974 PCLOQ9Y6V0 5065 aa8.88□□□□□ -0.99
LINC00540-202ENST00000616974 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.88□□□□□ -0.99
LINC00540-202ENST00000616974 C16orf90A8MZG2 172 aa8.88□□□□□ -0.99
LINC00540-202ENST00000616974 VCYO14598 125 aa8.88□□□□□ -0.99
LINC00540-202ENST00000616974 HLA-DQA1P01909 254 aa8.88□□□□□ -0.99
LINC00540-202ENST00000616974 CRPP02741 224 aa8.88□□□□□ -0.99
LINC00540-202ENST00000616974 CBLN2Q8IUK8 224 aa8.88□□□□□ -0.99
LINC00540-202ENST00000616974 SRRM2Q9UQ35 2752 aaKnown RBP8.88□□□□□ -0.99
LINC00540-202ENST00000616974 FCER1GP30273 86 aa8.87□□□□□ -0.99
LINC00540-202ENST00000616974 SVBPQ8N300 66 aa8.87□□□□□ -0.99
LINC00540-202ENST00000616974 C20orf78Q9BR46 151 aa8.87□□□□□ -0.99
LINC00540-202ENST00000616974 HAMPP81172 84 aa8.86□□□□□ -0.99
LINC00540-202ENST00000616974 AMMECR1LQ6DCA0 310 aa8.86□□□□□ -0.99
LINC00540-202ENST00000616974 Q8N814 137 aa8.86□□□□□ -0.99
LINC00540-202ENST00000616974 YPEL4Q96NS1 127 aa8.86□□□□□ -0.99
LINC00540-202ENST00000616974 C1orf43Q9BWL3 253 aa8.86□□□□□ -0.99
LINC00540-202ENST00000616974 UBE2D4Q9Y2X8 147 aa8.86□□□□□ -0.99
LINC00540-202ENST00000616974 SNAPINO95295 136 aa8.85□□□□□ -0.99
LINC00540-202ENST00000616974 PPBPP02775 128 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms