RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 CLEC2BQ92478 149 aa9.33□□□□□ -0.92
MSH6-213ENST00000614496 IGLV4-3A0A075B6K6 122 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 TRBV7-9A0A0J9YWB2 115 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 RPL35AP18077 110 aaKnown RBP9.32□□□□□ -0.92
MSH6-213ENST00000614496 ZNF580Q9UK33 172 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 A0A0J9YXY3 114 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 TRBV27A0A0K0K1C4 114 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 CRYGDP07320 174 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 RNASE1P07998 156 aaKnown RBP9.32□□□□□ -0.92
MSH6-213ENST00000614496 PRRC2AP48634 2157 aaKnown RBP9.32□□□□□ -0.92
MSH6-213ENST00000614496 ABCA12Q86UK0 2595 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 K7EQG2 157 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 DCANP1Q8TF63 244 aa9.32□□□□□ -0.92
MSH6-213ENST00000614496 FN1P02751 2386 aaKnown RBP9.32□□□□□ -0.92
MSH6-213ENST00000614496 LINC01546A6NGU7 62 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 LGALS9O00182 355 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 SOCS3O14543 225 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 C15orf53Q8NAA6 179 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 Q9H8V8 135 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 TRGV4A0A0C4DH28 118 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 TMEM223A0PJW6 202 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 LINC01619G3V211 115 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 TSHBP01222 138 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 LINC00158P58513 81 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 DSCR9P59020 149 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 ELANEP08246 267 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 UBE2D1P51668 147 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 TMEM61Q8N0U2 210 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 CHCHD5Q9BSY4 110 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 VPREB3Q9UKI3 123 aa9.31□□□□□ -0.92
MSH6-213ENST00000614496 CENPEQ02224 2701 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 IGHV3-33P01772 117 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 GATA3P23771 443 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 ATP6V0E2Q8NHE4 81 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 COPS9Q8WXC6 57 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 ICOSQ9Y6W8 199 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 B5MCH6 92 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 SPATA25Q9BR10 227 aa9.3□□□□□ -0.92
MSH6-213ENST00000614496 XGP55808 180 aa9.29□□□□□ -0.92
MSH6-213ENST00000614496 TEX49A0A1B0GTD5 131 aa9.29□□□□□ -0.92
MSH6-213ENST00000614496 NFE4Q86UQ8 179 aa9.29□□□□□ -0.92
MSH6-213ENST00000614496 ZNF575Q86XF7 245 aa9.29□□□□□ -0.92
MSH6-213ENST00000614496 CRIP2P52943 208 aaPredicted RBP9.28□□□□□ -0.92
MSH6-213ENST00000614496 RNF183Q96D59 192 aa9.28□□□□□ -0.92
MSH6-213ENST00000614496 SS18L2Q9UHA2 77 aa9.28□□□□□ -0.92
MSH6-213ENST00000614496 IGHV1-58A0A0C4DH39 117 aa9.27□□□□□ -0.92
MSH6-213ENST00000614496 GAGE7O76087 117 aa9.27□□□□□ -0.92
MSH6-213ENST00000614496 GAGE12FP0CL80 117 aa9.27□□□□□ -0.92
MSH6-213ENST00000614496 GAGE12GP0CL81 117 aa9.27□□□□□ -0.92
MSH6-213ENST00000614496 GAGE12IP0CL82 117 aa9.27□□□□□ -0.92
MSH6-213ENST00000614496 NSUN5P1Q3KNT7 163 aa9.27□□□□□ -0.92
MSH6-213ENST00000614496 IGLV1-40P01703 118 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 JMJD1CQ15652 2540 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 TRBV6-5A0A0K0K1A5 114 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 C18orf65Q6ZTR6 163 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 C9orf85Q96MD7 179 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 LINC00467Q9BRT7 94 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 SPANXA1Q9NS26 97 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 CDKN2A-AS1Q9UH64 79 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 KIF25-AS1Q9Y6Z4 181 aa9.27□□□□□ -0.93
MSH6-213ENST00000614496 MTORP42345 2549 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 PKD1L2Q7Z442 2459 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 TRIAP1O43715 76 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 PSMB8P28062 276 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 LAMA5O15230 3695 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 PFN2P35080 140 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 CFAP161Q6P656 301 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 Q6ZSV7 163 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 MUC4Q99102 2169 aa9.26□□□□□ -0.93
MSH6-213ENST00000614496 PAX4O43316 350 aa9.25□□□□□ -0.93
MSH6-213ENST00000614496 PRB1P04280 392 aa9.25□□□□□ -0.93
MSH6-213ENST00000614496 LINC00315P59091 139 aa9.25□□□□□ -0.93
MSH6-213ENST00000614496 GAGE6Q13070 117 aa9.25□□□□□ -0.93
MSH6-213ENST00000614496 ZZEF1O43149 2961 aa9.25□□□□□ -0.93
MSH6-213ENST00000614496 CRPP02741 224 aa9.25□□□□□ -0.93
MSH6-213ENST00000614496 IFITM1P13164 125 aa9.25□□□□□ -0.93
MSH6-213ENST00000614496 SMCPP49901 116 aaPredicted RBP9.25□□□□□ -0.93
MSH6-213ENST00000614496 UBE2D3P61077 147 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 UBE2D2P62837 147 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 RPL32P62910 135 aaKnown RBP9.24□□□□□ -0.93
MSH6-213ENST00000614496 NOP10Q9NPE3 64 aaKnown RBP9.24□□□□□ -0.93
MSH6-213ENST00000614496 A0A0B4J2C4 111 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 TRBV10-2A0A0K0K1G8 114 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 DEFB130BP0DP73 79 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 DEFB130AP0DP74 79 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 PRO0461Q9UI25 63 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 GAGE2AQ6NT46 116 aa9.24□□□□□ -0.93
MSH6-213ENST00000614496 ANKRD17O75179 2603 aaKnown RBP9.23□□□□□ -0.93
MSH6-213ENST00000614496 HERVK_113P63121 156 aa9.23□□□□□ -0.93
MSH6-213ENST00000614496 RS1O15537 224 aa9.23□□□□□ -0.93
MSH6-213ENST00000614496 VSIG2Q96IQ7 327 aa9.23□□□□□ -0.93
MSH6-213ENST00000614496 Q96MF0 132 aa9.23□□□□□ -0.93
MSH6-213ENST00000614496 C3orf56Q8N813 242 aa9.23□□□□□ -0.93
MSH6-213ENST00000614496 TMEM263Q8WUH6 116 aaKnown RBP9.22□□□□□ -0.93
MSH6-213ENST00000614496 MIAQ16674 131 aa9.22□□□□□ -0.93
MSH6-213ENST00000614496 CLUHP3Q96NS8 147 aa9.22□□□□□ -0.93
MSH6-213ENST00000614496 ODF3Q96PU9 254 aa9.22□□□□□ -0.93
MSH6-213ENST00000614496 HIVEP2P31629 2446 aa9.21□□□□□ -0.93
MSH6-213ENST00000614496 TMEM243Q9BU79 118 aa9.21□□□□□ -0.93
MSH6-213ENST00000614496 MAP6D1Q9H9H5 199 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms