RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 UPK3BQ9BT76 320 aa9.85□□□□□ -0.83
UPF1-211ENST00000600868 STARD9Q9P2P6 4700 aa9.85□□□□□ -0.83
UPF1-211ENST00000600868 TRAV8-6A0A0B4J262 113 aa9.84□□□□□ -0.83
UPF1-211ENST00000600868 ESDP10768 282 aa9.84□□□□□ -0.83
UPF1-211ENST00000600868 AMTP48728 403 aa9.84□□□□□ -0.83
UPF1-211ENST00000600868 LGALS9CQ6DKI2 356 aa9.84□□□□□ -0.83
UPF1-211ENST00000600868 TMEM243Q9BU79 118 aa9.84□□□□□ -0.83
UPF1-211ENST00000600868 C1orf196B1AJZ1 125 aa9.83□□□□□ -0.84
UPF1-211ENST00000600868 RAB5BP61020 215 aa9.83□□□□□ -0.84
UPF1-211ENST00000600868 FA2HQ7L5A8 372 aa9.83□□□□□ -0.84
UPF1-211ENST00000600868 UBE2DNLQ8IWF7 75 aa9.83□□□□□ -0.84
UPF1-211ENST00000600868 CHCHD7Q9BUK0 85 aa9.83□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BKO60814 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BJP06899 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 LINC00614P0C842 121 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BOP23527 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BBP33778 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BDP58876 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BCP62807 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 LAGE3Q14657 143 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST2H2BEQ16778 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 ORMDL2Q53FV1 153 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.82□□□□□ -0.84
UPF1-211ENST00000600868 NIT1Q86X76 327 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BHQ93079 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BNQ99877 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 HIST1H2BMQ99879 126 aa9.82□□□□□ -0.84
UPF1-211ENST00000600868 H7C423 109 aa9.81□□□□□ -0.84
UPF1-211ENST00000600868 PKIAP61925 76 aa9.81□□□□□ -0.84
UPF1-211ENST00000600868 BAGE3Q86Y29 109 aa9.81□□□□□ -0.84
UPF1-211ENST00000600868 URB1-AS1Q96HZ7 61 aa9.81□□□□□ -0.84
UPF1-211ENST00000600868 CHCHD5Q9BSY4 110 aa9.81□□□□□ -0.84
UPF1-211ENST00000600868 AP5S1Q9NUS5 200 aa9.81□□□□□ -0.84
UPF1-211ENST00000600868 PLECQ15149 4684 aaKnown RBP9.8□□□□□ -0.84
UPF1-211ENST00000600868 WFDC10BQ8IUB3 73 aa9.8□□□□□ -0.84
UPF1-211ENST00000600868 C20orf203Q8NBC4 194 aa9.8□□□□□ -0.84
UPF1-211ENST00000600868 CHCHD1Q96BP2 118 aaKnown RBP9.8□□□□□ -0.84
UPF1-211ENST00000600868 UBE2L6O14933 153 aa9.79□□□□□ -0.84
UPF1-211ENST00000600868 SIVA1O15304 175 aa9.79□□□□□ -0.84
UPF1-211ENST00000600868 DNAH10OSP0CZ25 163 aa9.79□□□□□ -0.84
UPF1-211ENST00000600868 G0S2P27469 103 aa9.79□□□□□ -0.84
UPF1-211ENST00000600868 LINC00476Q8WZB0 136 aa9.79□□□□□ -0.84
UPF1-211ENST00000600868 TMEM18Q96B42 140 aa9.79□□□□□ -0.84
UPF1-211ENST00000600868 Q9H8V8 135 aa9.79□□□□□ -0.84
UPF1-211ENST00000600868 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.78□□□□□ -0.84
UPF1-211ENST00000600868 IGKV2-29A2NJV5 120 aaPredicted RBP9.78□□□□□ -0.84
UPF1-211ENST00000600868 GAGE6Q13070 117 aa9.78□□□□□ -0.84
UPF1-211ENST00000600868 RNASEKQ6P5S7 137 aaKnown RBP9.78□□□□□ -0.84
UPF1-211ENST00000600868 A0A1B0GUV1 79 aa9.77□□□□□ -0.85
UPF1-211ENST00000600868 TMEM262E9PQX1 116 aa9.77□□□□□ -0.85
UPF1-211ENST00000600868 FGF6P10767 208 aa9.77□□□□□ -0.85
UPF1-211ENST00000600868 LINC00310P59036 64 aa9.77□□□□□ -0.85
UPF1-211ENST00000600868 SMAGPQ0VAQ4 97 aa9.77□□□□□ -0.85
UPF1-211ENST00000600868 LINC01556Q5JQF7 62 aa9.77□□□□□ -0.85
UPF1-211ENST00000600868 MRPL52Q86TS9 123 aaKnown RBP9.77□□□□□ -0.85
UPF1-211ENST00000600868 A0A087WX48 190 aa9.76□□□□□ -0.85
UPF1-211ENST00000600868 LINC01549A6NIU2 74 aa9.76□□□□□ -0.85
UPF1-211ENST00000600868 SERF1AO75920 110 aa9.76□□□□□ -0.85
UPF1-211ENST00000600868 LY6G6CO95867 125 aa9.76□□□□□ -0.85
UPF1-211ENST00000600868 ZNF25P17030 456 aaPredicted RBP9.76□□□□□ -0.85
UPF1-211ENST00000600868 BTF3P20290 206 aaKnown RBP9.76□□□□□ -0.85
UPF1-211ENST00000600868 RPL39P62891 51 aaKnown RBP9.76□□□□□ -0.85
UPF1-211ENST00000600868 COA6Q5JTJ3 125 aaKnown RBP9.76□□□□□ -0.85
UPF1-211ENST00000600868 TIMM21Q9BVV7 248 aa9.76□□□□□ -0.85
UPF1-211ENST00000600868 CYSLTR1Q9Y271 337 aa9.76□□□□□ -0.85
UPF1-211ENST00000600868 CSDC2Q9Y534 153 aaKnown RBP9.76□□□□□ -0.85
UPF1-211ENST00000600868 K7EP13 123 aa9.75□□□□□ -0.85
UPF1-211ENST00000600868 RBX1P62877 108 aa9.75□□□□□ -0.85
UPF1-211ENST00000600868 MPV17L2Q567V2 206 aa9.75□□□□□ -0.85
UPF1-211ENST00000600868 AMMECR1LQ6DCA0 310 aa9.75□□□□□ -0.85
UPF1-211ENST00000600868 C2orf66Q6UXQ4 117 aa9.75□□□□□ -0.85
UPF1-211ENST00000600868 TOMM6Q96B49 74 aa9.75□□□□□ -0.85
UPF1-211ENST00000600868 UBE2D4Q9Y2X8 147 aa9.75□□□□□ -0.85
UPF1-211ENST00000600868 LYSTQ99698 3801 aa9.74□□□□□ -0.85
UPF1-211ENST00000600868 A0A096LNJ9 63 aa9.74□□□□□ -0.85
UPF1-211ENST00000600868 HSBP1O75506 76 aa9.74□□□□□ -0.85
UPF1-211ENST00000600868 Q8N3U1 123 aa9.74□□□□□ -0.85
UPF1-211ENST00000600868 SPANXA1Q9NS26 97 aa9.74□□□□□ -0.85
UPF1-211ENST00000600868 PYGO1Q9Y3Y4 419 aa9.74□□□□□ -0.85
UPF1-211ENST00000600868 TRAV9-2A0A087WT02 112 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 NUPR1O60356 82 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 IGHV3-30P01768 117 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 IGHV3-33P01772 117 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 HBDP02042 147 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 IGHV3-30-3P0DP02 117 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 IGHV3-30-5P0DP03 117 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 NDUFA6P56556 154 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 Q8N976 141 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 OR5A1Q8NGJ0 315 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 TMEM101Q96IK0 257 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 VPS13DQ5THJ4 4388 aa9.73□□□□□ -0.85
UPF1-211ENST00000600868 ALMS1Q8TCU4 4167 aa9.72□□□□□ -0.85
UPF1-211ENST00000600868 IGLV4-60A0A075B6I1 120 aa9.72□□□□□ -0.85
UPF1-211ENST00000600868 NPSP0C0P6 89 aa9.72□□□□□ -0.85
UPF1-211ENST00000600868 PMCHL1Q16048 86 aa9.72□□□□□ -0.85
UPF1-211ENST00000600868 DGAT2L7PQ6IED9 249 aa9.72□□□□□ -0.85
UPF1-211ENST00000600868 C10orf126Q8N4M7 172 aa9.72□□□□□ -0.85
UPF1-211ENST00000600868 NBDYA0A0U1RRE5 68 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 LCE6AA0A183 80 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 IGIPA6NJ69 53 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms