RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TSHBP01222 138 aa9.47□□□□□ -0.89
SHKBP1-217ENST00000598558 FUSP35637 526 aaKnown RBP eCLIP9.47□□□□□ -0.89
SHKBP1-217ENST00000598558 KCNIP4Q6PIL6 250 aa9.47□□□□□ -0.89
SHKBP1-217ENST00000598558 TMEM243Q9BU79 118 aa9.47□□□□□ -0.89
SHKBP1-217ENST00000598558 CHCHD7Q9BUK0 85 aa9.47□□□□□ -0.89
SHKBP1-217ENST00000598558 CTDSP1Q9GZU7 261 aa9.47□□□□□ -0.89
SHKBP1-217ENST00000598558 IGLV4-60A0A075B6I1 120 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 I3L3M4 83 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 PMCHP20382 165 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 AMTP48728 403 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 KRTAP10-2P60368 255 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 LAGE3Q14657 143 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 C20orf203Q8NBC4 194 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 UBE2WQ96B02 151 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 BTF3L4Q96K17 158 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 IMMP2LQ96T52 175 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 TMEM242Q9NWH2 141 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 URGCP-MRPS24S4R325 110 aa9.46□□□□□ -0.9
SHKBP1-217ENST00000598558 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 A0A087WTM6 91 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 TRBV27A0A0K0K1C4 114 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 IGKV2-29A2NJV5 120 aaPredicted RBP9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 LRCOL1A6NCL2 159 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 D6R8Y8 96 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 S100A8P05109 93 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 CKS2P33552 79 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 WFDC2Q14508 124 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 SLC7A5P1Q8MH63 180 aa9.45□□□□□ -0.9
SHKBP1-217ENST00000598558 TRBV24-1A0A075B6N3 115 aa9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 TNFRSF6BO95407 300 aa9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 NPYP01303 97 aa9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 ANGP03950 147 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 ESDP10768 282 aa9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 SUMO2P61956 95 aaKnown RBP9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 TMEM136Q6ZRR5 245 aa9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 RPS10P5Q9NQ39 176 aa9.44□□□□□ -0.9
SHKBP1-217ENST00000598558 TRAV8-3A0A0A6YYJ7 113 aa9.43□□□□□ -0.9
SHKBP1-217ENST00000598558 APOC3P02656 99 aa9.43□□□□□ -0.9
SHKBP1-217ENST00000598558 CLPSL2Q6UWE3 100 aa9.43□□□□□ -0.9
SHKBP1-217ENST00000598558 SPATA12Q7Z6I5 190 aa9.43□□□□□ -0.9
SHKBP1-217ENST00000598558 LINC00269Q8N2A0 174 aa9.43□□□□□ -0.9
SHKBP1-217ENST00000598558 PRR34Q9NV39 138 aa9.43□□□□□ -0.9
SHKBP1-217ENST00000598558 PKHD1P08F94 4074 aa9.42□□□□□ -0.9
SHKBP1-217ENST00000598558 A0A1B0GUV1 79 aa9.42□□□□□ -0.9
SHKBP1-217ENST00000598558 VCYO14598 125 aa9.42□□□□□ -0.9
SHKBP1-217ENST00000598558 ELOBQ15370 118 aa9.42□□□□□ -0.9
SHKBP1-217ENST00000598558 KRTAP26-1Q6PEX3 210 aa9.42□□□□□ -0.9
SHKBP1-217ENST00000598558 DNAH5Q8TE73 4624 aa9.41□□□□□ -0.9
SHKBP1-217ENST00000598558 APCSP02743 223 aa9.41□□□□□ -0.9
SHKBP1-217ENST00000598558 RHEBQ15382 184 aa9.41□□□□□ -0.9
SHKBP1-217ENST00000598558 C20orf78Q9BR46 151 aa9.41□□□□□ -0.9
SHKBP1-217ENST00000598558 IGKV2D-24A0A075B6R9 120 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 LECT2O14960 151 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 PPP1R17O96001 155 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 FGF6P10767 208 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 PKIAP61925 76 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 RPL32P62910 135 aaKnown RBP9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 ORMDL3Q8N138 153 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 BAALCQ8WXS3 180 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 PRELID3AQ96N28 172 aa9.4□□□□□ -0.9
SHKBP1-217ENST00000598558 TRAV9-1A0A075B6T8 112 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 UBE2L6O14933 153 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 PSCAO43653 123 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 PPBPP02775 128 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 KIAA1644Q3SXP7 199 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 SMIM2Q9BVW6 85 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 TM2D2Q9BX73 214 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 LRP1BQ9NZR2 4599 aa9.39□□□□□ -0.91
SHKBP1-217ENST00000598558 PHOX2AO14813 284 aa9.38□□□□□ -0.91
SHKBP1-217ENST00000598558 REG3AQ06141 175 aa9.38□□□□□ -0.91
SHKBP1-217ENST00000598558 Q0VG73 95 aa9.38□□□□□ -0.91
SHKBP1-217ENST00000598558 IGLV10-54A0A075B6I4 117 aa9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 TGIF2-C20orf24A0A0A6YYL0 155 aa9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 PRSS47A8MTI9 375 aa9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 H7C423 109 aa9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 TCAPO15273 167 aa9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 S100PP25815 95 aa9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 RNASEKQ6P5S7 137 aaKnown RBP9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 SVBPQ8N300 66 aa9.37□□□□□ -0.91
SHKBP1-217ENST00000598558 LOC389332A0A1B0GUA5 103 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 SNAPINO95295 136 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 CRPP02741 224 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 FCER1GP30273 86 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 MIAQ16674 131 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 FAM104AQ969W3 186 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 YPEL4Q96NS1 127 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 KIR2DL4Q99706 377 aa9.36□□□□□ -0.91
SHKBP1-217ENST00000598558 KIAA1109Q2LD37 5005 aa9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 C16orf90A8MZG2 172 aa9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 RPL39P62891 51 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 AMMECR1LQ6DCA0 310 aa9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 MRPL52Q86TS9 123 aaKnown RBP9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 Q8N814 137 aa9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 RMI2Q96E14 147 aa9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 C1orf43Q9BWL3 253 aa9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 GNB1LQ9BYB4 327 aa9.35□□□□□ -0.91
SHKBP1-217ENST00000598558 IGKV3OR2-268A0A0C4DH90 116 aa9.34□□□□□ -0.91
SHKBP1-217ENST00000598558 NDUFA5Q16718 116 aa9.34□□□□□ -0.91
SHKBP1-217ENST00000598558 CDC42SE2Q9NRR3 84 aa9.34□□□□□ -0.91
SHKBP1-217ENST00000598558 PGPEP1Q9NXJ5 209 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms