RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 Q6ZRU5 148 aa13.97□□□□□ -0.17
SHMT1-210ENST00000583780 PGLYRP4Q96LB8 373 aa13.97□□□□□ -0.17
SHMT1-210ENST00000583780 C1orf43Q9BWL3 253 aa13.97□□□□□ -0.17
SHMT1-210ENST00000583780 SMDT1Q9H4I9 107 aa13.97□□□□□ -0.17
SHMT1-210ENST00000583780 TNXBP22105 4242 aa13.97□□□□□ -0.17
SHMT1-210ENST00000583780 USP17L23D6RBM5 183 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 UBE2D3P61077 147 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 RPL23P62829 140 aaKnown RBP13.96□□□□□ -0.17
SHMT1-210ENST00000583780 UBE2D2P62837 147 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 CT83Q5H943 113 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 DGAT2L7PQ6IED9 249 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 WDR73Q6P4I2 378 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 C15orf54Q8N8G6 183 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 DPH3P1Q9H4G8 78 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 OSTCQ9NRP0 149 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 NAT8Q9UHE5 227 aa13.96□□□□□ -0.17
SHMT1-210ENST00000583780 RNF213Q63HN8 5207 aa13.96□□□□□ -0.18
SHMT1-210ENST00000583780 SUMO4Q6EEV6 95 aa13.95□□□□□ -0.18
SHMT1-210ENST00000583780 SDIM1Q6ZPB5 146 aa13.95□□□□□ -0.18
SHMT1-210ENST00000583780 OR10G8Q8NGN5 311 aa13.95□□□□□ -0.18
SHMT1-210ENST00000583780 ISOC2Q96AB3 205 aa13.95□□□□□ -0.18
SHMT1-210ENST00000583780 CNFNQ9BYD5 112 aa13.95□□□□□ -0.18
SHMT1-210ENST00000583780 TMEM262E9PQX1 116 aa13.93□□□□□ -0.18
SHMT1-210ENST00000583780 TSKUQ8WUA8 353 aa13.93□□□□□ -0.18
SHMT1-210ENST00000583780 BORCS7Q96B45 105 aa13.93□□□□□ -0.18
SHMT1-210ENST00000583780 H7C1H1 209 aa13.92□□□□□ -0.18
SHMT1-210ENST00000583780 MPV17L2Q567V2 206 aa13.92□□□□□ -0.18
SHMT1-210ENST00000583780 KRTAP26-1Q6PEX3 210 aa13.92□□□□□ -0.18
SHMT1-210ENST00000583780 KCNIP4Q6PIL6 250 aa13.92□□□□□ -0.18
SHMT1-210ENST00000583780 V9GYV3 84 aa13.92□□□□□ -0.18
SHMT1-210ENST00000583780 TRBV6-8A0A0A6YYG3 113 aa13.91□□□□□ -0.18
SHMT1-210ENST00000583780 HIGD1CA8MV81 97 aa13.91□□□□□ -0.18
SHMT1-210ENST00000583780 M0QY20 66 aa13.91□□□□□ -0.18
SHMT1-210ENST00000583780 SMIM15Q7Z3B0 74 aa13.91□□□□□ -0.18
SHMT1-210ENST00000583780 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.91□□□□□ -0.18
SHMT1-210ENST00000583780 IFITM2Q01629 132 aa13.9□□□□□ -0.18
SHMT1-210ENST00000583780 CLLU1Q5K131 121 aa13.9□□□□□ -0.18
SHMT1-210ENST00000583780 GFRA4Q9GZZ7 299 aa13.9□□□□□ -0.18
SHMT1-210ENST00000583780 HLA-DQA1P01909 254 aa13.89□□□□□ -0.19
SHMT1-210ENST00000583780 FOXA3P55318 350 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-210ENST00000583780 RASL11AQ6T310 242 aa13.89□□□□□ -0.19
SHMT1-210ENST00000583780 CRPP02741 224 aa13.88□□□□□ -0.19
SHMT1-210ENST00000583780 ANGP03950 147 aaKnown RBP13.88□□□□□ -0.19
SHMT1-210ENST00000583780 CIRBPQ14011 172 aaKnown RBP13.88□□□□□ -0.19
SHMT1-210ENST00000583780 TRAV26-2A0A0B4J265 109 aa13.87□□□□□ -0.19
SHMT1-210ENST00000583780 A0A1B0GUT8 65 aa13.87□□□□□ -0.19
SHMT1-210ENST00000583780 FAM231BA6NCW3 169 aa13.87□□□□□ -0.19
SHMT1-210ENST00000583780 MIAQ16674 131 aa13.87□□□□□ -0.19
SHMT1-210ENST00000583780 PRR34Q9NV39 138 aa13.86□□□□□ -0.19
SHMT1-210ENST00000583780 NUP35Q8NFH5 326 aa13.85□□□□□ -0.19
SHMT1-210ENST00000583780 NTM-AS1Q6ZSK4 140 aa13.84□□□□□ -0.19
SHMT1-210ENST00000583780 GATD1Q8NB37 220 aa13.84□□□□□ -0.19
SHMT1-210ENST00000583780 NIT2Q9NQR4 276 aa13.84□□□□□ -0.19
SHMT1-210ENST00000583780 NAT8BQ9UHF3 227 aa13.84□□□□□ -0.19
SHMT1-210ENST00000583780 TMEM97Q5BJF2 176 aa13.83□□□□□ -0.2
SHMT1-210ENST00000583780 CHCHD5Q9BSY4 110 aa13.83□□□□□ -0.2
SHMT1-210ENST00000583780 RIGQ13278 110 aa13.82□□□□□ -0.2
SHMT1-210ENST00000583780 SMIM27A0A1W2PRY6 76 aa13.81□□□□□ -0.2
SHMT1-210ENST00000583780 SLPIP03973 132 aa13.81□□□□□ -0.2
SHMT1-210ENST00000583780 ODF1Q14990 250 aa13.81□□□□□ -0.2
SHMT1-210ENST00000583780 CLRN3Q8NCR9 226 aa13.81□□□□□ -0.2
SHMT1-210ENST00000583780 RPL39LQ96EH5 51 aaKnown RBP13.81□□□□□ -0.2
SHMT1-210ENST00000583780 TRBV25-1A0A075B6N4 114 aa13.8□□□□□ -0.2
SHMT1-210ENST00000583780 A0A087WYN8 130 aa13.8□□□□□ -0.2
SHMT1-210ENST00000583780 CNBPP62633 177 aaKnown RBP13.8□□□□□ -0.2
SHMT1-210ENST00000583780 LINC00269Q8N2A0 174 aa13.8□□□□□ -0.2
SHMT1-210ENST00000583780 TMEM191AQ9H0A3 160 aa13.8□□□□□ -0.2
SHMT1-210ENST00000583780 IGHV1-24A0A0C4DH33 117 aa13.79□□□□□ -0.2
SHMT1-210ENST00000583780 RBX1P62877 108 aa13.79□□□□□ -0.2
SHMT1-210ENST00000583780 CLPSL2Q6UWE3 100 aa13.79□□□□□ -0.2
SHMT1-210ENST00000583780 GAGE6Q13070 117 aa13.78□□□□□ -0.2
SHMT1-210ENST00000583780 AMN1Q8IY45 258 aa13.78□□□□□ -0.2
SHMT1-210ENST00000583780 CHTF8P0CG12 524 aa13.77□□□□□ -0.21
SHMT1-210ENST00000583780 PNRC1Q12796 327 aaPredicted RBP13.77□□□□□ -0.21
SHMT1-210ENST00000583780 LINC01600Q96MT4 127 aa13.77□□□□□ -0.21
SHMT1-210ENST00000583780 CAMPP49913 170 aa13.76□□□□□ -0.21
SHMT1-210ENST00000583780 PKIAP61925 76 aa13.76□□□□□ -0.21
SHMT1-210ENST00000583780 COTL1Q14019 142 aa13.76□□□□□ -0.21
SHMT1-210ENST00000583780 IQCJQ1A5X6 159 aa13.76□□□□□ -0.21
SHMT1-210ENST00000583780 MRPL54Q6P161 138 aaKnown RBP13.76□□□□□ -0.21
SHMT1-210ENST00000583780 DPH3Q96FX2 82 aa13.76□□□□□ -0.21
SHMT1-210ENST00000583780 RNF185Q96GF1 192 aa13.76□□□□□ -0.21
SHMT1-210ENST00000583780 PPP1R2P9O14990 202 aa13.75□□□□□ -0.21
SHMT1-210ENST00000583780 GAS8-AS1O95177 125 aa13.75□□□□□ -0.21
SHMT1-210ENST00000583780 RAB4AP20338 218 aa13.75□□□□□ -0.21
SHMT1-210ENST00000583780 UQCC3Q6UW78 93 aa13.75□□□□□ -0.21
SHMT1-210ENST00000583780 SPACA4Q8TDM5 124 aa13.75□□□□□ -0.21
SHMT1-210ENST00000583780 TMEM243Q9BU79 118 aa13.75□□□□□ -0.21
SHMT1-210ENST00000583780 AMTP48728 403 aa13.74□□□□□ -0.21
SHMT1-210ENST00000583780 COMMD7Q86VX2 200 aa13.74□□□□□ -0.21
SHMT1-210ENST00000583780 IGLV10-54A0A075B6I4 117 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 IGHV3-64A0A075B6Q5 118 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 hDV102S1A0JD36 115 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 SDHAF1A6NFY7 115 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 SMKR1H3BMG3 65 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 PHOX2AO14813 284 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 NCR2O95944 276 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 MRAP2Q96G30 205 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 PLAC8Q9NZF1 115 aa13.73□□□□□ -0.21
SHMT1-210ENST00000583780 F8W036 122 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms