RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 RPL13AP40429 203 aaKnown RBP8.94□□□□□ -0.98
SHMT1-208ENST00000582352 DEFB112Q30KQ8 113 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 RNF152Q8N8N0 203 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 FAM104AQ969W3 186 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 UBE2WQ96B02 151 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 VSIG2Q96IQ7 327 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 SPANXA1Q9NS26 97 aa8.94□□□□□ -0.98
SHMT1-208ENST00000582352 SPG11Q96JI7 2443 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 TINCRA0A1B0GVN0 87 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 HOXD3P31249 432 aaPredicted RBP8.93□□□□□ -0.98
SHMT1-208ENST00000582352 CRYBG3Q68DQ2 2970 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 DUX3Q96PT4 197 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 TRAV8-4A0A0B4J246 113 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 KNCNA6PVL3 124 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 NPC2P61916 151 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 ADAMTSL4-AS1Q5T5F5 129 aa8.93□□□□□ -0.98
SHMT1-208ENST00000582352 GAGE2BQ13066 116 aa8.92□□□□□ -0.98
SHMT1-208ENST00000582352 GAGE2EQ4V326 116 aa8.92□□□□□ -0.98
SHMT1-208ENST00000582352 C2orf82Q6UX34 121 aa8.92□□□□□ -0.98
SHMT1-208ENST00000582352 GAGE2DQ9UEU5 116 aa8.92□□□□□ -0.98
SHMT1-208ENST00000582352 GATA3P23771 443 aa8.92□□□□□ -0.98
SHMT1-208ENST00000582352 LINC01600Q96MT4 127 aa8.92□□□□□ -0.98
SHMT1-208ENST00000582352 YAE1D1Q9NRH1 226 aa8.92□□□□□ -0.98
SHMT1-208ENST00000582352 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.91□□□□□ -0.98
SHMT1-208ENST00000582352 IGKV2-29A2NJV5 120 aaPredicted RBP8.91□□□□□ -0.98
SHMT1-208ENST00000582352 ZNF415Q09FC8 603 aa8.91□□□□□ -0.98
SHMT1-208ENST00000582352 UBE2D4Q9Y2X8 147 aa8.91□□□□□ -0.98
SHMT1-208ENST00000582352 SPTBN4Q9H254 2564 aa8.91□□□□□ -0.98
SHMT1-208ENST00000582352 CREBBPQ92793 2442 aa8.91□□□□□ -0.98
SHMT1-208ENST00000582352 A8MZ25 164 aa8.91□□□□□ -0.98
SHMT1-208ENST00000582352 DEFB131AP59861 70 aa8.9□□□□□ -0.98
SHMT1-208ENST00000582352 CHCHD7Q9BUK0 85 aa8.9□□□□□ -0.98
SHMT1-208ENST00000582352 CELSR2Q9HCU4 2923 aa8.9□□□□□ -0.98
SHMT1-208ENST00000582352 ITPR1Q14643 2758 aa8.9□□□□□ -0.98
SHMT1-208ENST00000582352 TRAV4A0A0B4J268 109 aa8.9□□□□□ -0.98
SHMT1-208ENST00000582352 TMEM61Q8N0U2 210 aa8.9□□□□□ -0.98
SHMT1-208ENST00000582352 H3BT86 120 aa8.9□□□□□ -0.99
SHMT1-208ENST00000582352 NACAE9PAV3 2078 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 H7C423 109 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 Q6ZSV7 163 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 CLEC2BQ92478 149 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 LINC00467Q9BRT7 94 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 Q9UF83 564 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 CRLF1O75462 422 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 PRM2P04554 102 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 PIK3CD-AS1Q5SR53 167 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 Q6ZSN1 163 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 UBE2E2Q96LR5 201 aa8.89□□□□□ -0.99
SHMT1-208ENST00000582352 TIMM17BO60830 172 aa8.88□□□□□ -0.99
SHMT1-208ENST00000582352 IGHV3-38A0A0C4DH36 116 aa8.88□□□□□ -0.99
SHMT1-208ENST00000582352 IFITM1P13164 125 aa8.88□□□□□ -0.99
SHMT1-208ENST00000582352 NDUFV3P56181 108 aaKnown RBP8.88□□□□□ -0.99
SHMT1-208ENST00000582352 LST1O00453 97 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 TTC32Q5I0X7 151 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 DAND5Q8N907 189 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 VPREB3Q9UKI3 123 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 RBMY1BA6NDE4 496 aaKnown RBP8.87□□□□□ -0.99
SHMT1-208ENST00000582352 RBMY1EA6NEQ0 496 aaKnown RBP8.87□□□□□ -0.99
SHMT1-208ENST00000582352 RBMY1DP0C7P1 496 aaKnown RBP8.87□□□□□ -0.99
SHMT1-208ENST00000582352 GAGE5Q13069 117 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 GAGE6Q13070 117 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 C15orf53Q8NAA6 179 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 CDKN2A-AS1Q9UH64 79 aa8.87□□□□□ -0.99
SHMT1-208ENST00000582352 NDUFA1O15239 70 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 SLURP1P55000 103 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 CIRBPQ14011 172 aaKnown RBP8.86□□□□□ -0.99
SHMT1-208ENST00000582352 DGAT2L7PQ6IED9 249 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 LINC01356Q8N9X3 169 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 DNAJC30Q96LL9 226 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 A8MTW9 85 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 IGHV3-53P01767 116 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 DEFB136Q30KP8 78 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 Q6Q795 121 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 LINC01587Q99440 93 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 PRORYQ9H606 182 aa8.86□□□□□ -0.99
SHMT1-208ENST00000582352 DSCR9P59020 149 aa8.85□□□□□ -0.99
SHMT1-208ENST00000582352 ZNF702PQ9H963 129 aa8.85□□□□□ -0.99
SHMT1-208ENST00000582352 NHLRC4P0CG21 123 aaPredicted RBP8.84□□□□□ -0.99
SHMT1-208ENST00000582352 TMEM101Q96IK0 257 aa8.84□□□□□ -0.99
SHMT1-208ENST00000582352 IGLV5-45A0A087WSX0 123 aa8.84□□□□□ -0.99
SHMT1-208ENST00000582352 TIRAPP58753 221 aa8.84□□□□□ -0.99
SHMT1-208ENST00000582352 INSP01308 110 aa8.84□□□□□ -1
SHMT1-208ENST00000582352 C11orf72Q8NBR9 251 aa8.84□□□□□ -1
SHMT1-208ENST00000582352 SS18L2Q9UHA2 77 aa8.84□□□□□ -1
SHMT1-208ENST00000582352 FAM240AA0A1B0GVK7 77 aa8.83□□□□□ -1
SHMT1-208ENST00000582352 B5MCH6 92 aa8.83□□□□□ -1
SHMT1-208ENST00000582352 J3QLI3 93 aa8.83□□□□□ -1
SHMT1-208ENST00000582352 NRGNQ92686 78 aa8.83□□□□□ -1
SHMT1-208ENST00000582352 Q9H8V8 135 aa8.83□□□□□ -1
SHMT1-208ENST00000582352 PEMTQ9UBM1 199 aa8.83□□□□□ -1
SHMT1-208ENST00000582352 HERVK_113P63121 156 aa8.82□□□□□ -1
SHMT1-208ENST00000582352 MRPL23Q16540 153 aaKnown RBP8.82□□□□□ -1
SHMT1-208ENST00000582352 C18orf65Q6ZTR6 163 aa8.82□□□□□ -1
SHMT1-208ENST00000582352 DYNLRB2Q8TF09 96 aa8.82□□□□□ -1
SHMT1-208ENST00000582352 MAP6D1Q9H9H5 199 aa8.82□□□□□ -1
SHMT1-208ENST00000582352 BEAN1Q3B7T3 259 aa8.82□□□□□ -1
SHMT1-208ENST00000582352 LINC00308Q8TCZ7 52 aa8.82□□□□□ -1
SHMT1-208ENST00000582352 GAGE12JA6NER3 117 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 RS1O15537 224 aa8.81□□□□□ -1
SHMT1-208ENST00000582352 GAGE7O76087 117 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms