RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 ACYP2P14621 99 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 KRTDAPP60985 99 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 UBA52P62987 128 aaKnown RBP0.74□□□□□ -2.29
CHD3-217ENST00000574022 FAM213BQ8TBF2 198 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 PLAC4Q8WY50 150 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 DPY30Q9C005 99 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 DYNLRB1Q9NP97 96 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 NDUFA4L2Q9NRX3 87 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 KDM5AP29375 1690 aaKnown RBP0.74□□□□□ -2.29
CHD3-217ENST00000574022 MYOM1P52179 1685 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 NSD3Q9BZ95 1437 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 KIAA0100Q14667 2235 aaKnown RBP0.73□□□□□ -2.29
CHD3-217ENST00000574022 TECTAO75443 2155 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 ESPL1Q14674 2120 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 IFT172Q9UG01 1749 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 hADV29S1A0JD25 119 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 F2Z2F3 143 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 MT-ATP8P03928 68 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 SPINT3P49223 89 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 CCL18P55774 89 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 GNG2P59768 71 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 SPAG11BQ08648 103 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 Q0VG73 95 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 SPAG11AQ6PDA7 123 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 Q8N6K4 173 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 Q96NJ1 140 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 PMCHL2Q9BQD1 86 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 VAMP8Q9BV40 100 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 MANBALQ9NQG1 85 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 UQCR10Q9UDW1 63 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 R4GMQ9 66 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 V9GYH0 126 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 MED12Q93074 2177 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 MED13Q9UHV7 2174 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 ADGRL2O95490 1459 aa0.73□□□□□ -2.29
CHD3-217ENST00000574022 MAGI1Q96QZ7 1491 aaPredicted RBP0.73□□□□□ -2.29
CHD3-217ENST00000574022 FLG2Q5D862 2391 aaPredicted RBP0.72□□□□□ -2.29
CHD3-217ENST00000574022 ANKRD36BQ8N2N9 1353 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 ARHGEF5Q12774 1597 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 DIP2CQ9Y2E4 1556 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 A0A096LNT2 108 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 TRGV1A0A0A0MS02 117 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 TRAV1-2A0A0B4J238 106 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 LOC285095A0A1B0GVY8 99 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 CHKB-CPT1BH3BT56 60 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 K7EIL1 84 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 HMGN4O00479 90 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 FXYD6P3P58550 94 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 RPL37P61927 97 aaKnown RBP0.72□□□□□ -2.29
CHD3-217ENST00000574022 SEC11AP67812 179 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 BAGE3Q86Y29 109 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 FAM167A-AS1Q96KT0 104 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 WFDC6Q9BQY6 131 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 BPESC1Q9GZL8 116 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 Q9H521 79 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 LAMA4Q16363 1823 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 PRDM15P57071 1507 aaPredicted RBP0.72□□□□□ -2.29
CHD3-217ENST00000574022 NCOA6Q14686 2063 aaPredicted RBP0.72□□□□□ -2.29
CHD3-217ENST00000574022 ABCA4P78363 2273 aa0.72□□□□□ -2.29
CHD3-217ENST00000574022 SPTBP11277 2137 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 RP1L1Q8IWN7 2480 aaPredicted RBP0.71□□□□□ -2.3
CHD3-217ENST00000574022 CDK13Q14004 1512 aaKnown RBP0.71□□□□□ -2.3
CHD3-217ENST00000574022 ASCC3Q8N3C0 2202 aaKnown RBP0.71□□□□□ -2.3
CHD3-217ENST00000574022 CTXND1A0A1B0GTU2 59 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 COX6CP09669 75 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 UBE2D3P61077 147 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 UBE2D2P62837 147 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 LCE1CQ5T751 118 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 LCE1BQ5T7P3 118 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 Q5VV11 94 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 SMIM11BQ8TCY0 68 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 PRO1854Q9UHT4 67 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 V9GYS6 101 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 KIAA1551Q9HCM1 1747 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 PLEKHH2Q8IVE3 1493 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 SCN7AQ01118 1682 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 KIF21AQ7Z4S6 1674 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 CNTRLQ7Z7A1 2325 aa0.71□□□□□ -2.3
CHD3-217ENST00000574022 EHBP1L1Q8N3D4 1523 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 ARHGEF12Q9NZN5 1544 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 MARF1Q9Y4F3 1742 aaKnown RBP0.7□□□□□ -2.3
CHD3-217ENST00000574022 TRAV22A0A0B4J277 110 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 TMEM14DPA8MWL7 114 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 M0R135 149 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 ATOX1O00244 68 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 NDUFC1O43677 76 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 TRAPPC2P0DI81 140 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 TRAPPC2BP0DI82 140 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 TMEM170BQ5T4T1 132 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 VMO1Q7Z5L0 202 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 CDC42SE2Q9NRR3 84 aa0.7□□□□□ -2.3
CHD3-217ENST00000574022 MON2Q7Z3U7 1717 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 ZMYM4Q5VZL5 1548 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 CLTCQ00610 1675 aaKnown RBP0.69□□□□□ -2.3
CHD3-217ENST00000574022 MLH3Q9UHC1 1453 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 GVQW2A0A096LPI5 108 aaPredicted RBP0.69□□□□□ -2.3
CHD3-217ENST00000574022 IGLC7A0M8Q6 106 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 F8VRH5 84 aa0.69□□□□□ -2.3
CHD3-217ENST00000574022 UQCR11O14957 56 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms