RNA–Protein interactions for RNA: ENST00000573955.1

USP43-204, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 2,641 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-204ENST00000573955 TRAV2A0A0B4J234 112 aa11.91□□□□□ -0.5
USP43-204ENST00000573955 TMEM160Q9NX00 188 aa11.91□□□□□ -0.5
USP43-204ENST00000573955 SLC25A20O43772 301 aa11.91□□□□□ -0.5
USP43-204ENST00000573955 FOXC2Q99958 501 aa11.91□□□□□ -0.5
USP43-204ENST00000573955 ESM1Q9NQ30 184 aa11.91□□□□□ -0.5
USP43-204ENST00000573955 RPS28P62857 69 aaKnown RBP11.9□□□□□ -0.5
USP43-204ENST00000573955 SPANXN1Q5VSR9 72 aa11.9□□□□□ -0.5
USP43-204ENST00000573955 Q8N2B8 174 aa11.9□□□□□ -0.5
USP43-204ENST00000573955 Q6ZSV7 163 aa11.9□□□□□ -0.5
USP43-204ENST00000573955 KIR2DL5BQ8NHK3 375 aa11.9□□□□□ -0.5
USP43-204ENST00000573955 RNF185Q96GF1 192 aa11.9□□□□□ -0.5
USP43-204ENST00000573955 CNFNQ9BYD5 112 aa11.9□□□□□ -0.5
USP43-204ENST00000573955 LENEPQ9Y5L5 61 aa11.9□□□□□ -0.5
USP43-204ENST00000573955 TRAV21A0A0B4J279 112 aa11.9□□□□□ -0.51
USP43-204ENST00000573955 GATA1P15976 413 aaPredicted RBP11.9□□□□□ -0.51
USP43-204ENST00000573955 U3KQK5 164 aa11.9□□□□□ -0.51
USP43-204ENST00000573955 NSD1Q96L73 2696 aaPredicted RBP11.89□□□□□ -0.51
USP43-204ENST00000573955 M0R2P5 195 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 S100A4P26447 101 aaKnown RBP11.89□□□□□ -0.51
USP43-204ENST00000573955 TRAV26-2A0A0B4J265 109 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 A0A1W2PRX2 142 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 GNRH2O43555 120 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 ATP5LO75964 103 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 C3orf22Q8N5N4 141 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 RNF152Q8N8N0 203 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 KLHL30-AS1Q8NEE0 82 aa11.89□□□□□ -0.51
USP43-204ENST00000573955 M0R381 172 aa11.88□□□□□ -0.51
USP43-204ENST00000573955 TNFRSF6BO95407 300 aa11.88□□□□□ -0.51
USP43-204ENST00000573955 CD7P09564 240 aa11.88□□□□□ -0.51
USP43-204ENST00000573955 Q8N1Y9 231 aa11.88□□□□□ -0.51
USP43-204ENST00000573955 FAM19A4Q96LR4 140 aa11.88□□□□□ -0.51
USP43-204ENST00000573955 TRAV12-2A0A075B6T6 113 aa11.87□□□□□ -0.51
USP43-204ENST00000573955 UBE2D1P51668 147 aa11.87□□□□□ -0.51
USP43-204ENST00000573955 SNRPD3P62318 126 aaKnown RBP11.87□□□□□ -0.51
USP43-204ENST00000573955 LGALS9O00182 355 aa11.87□□□□□ -0.51
USP43-204ENST00000573955 NTN5Q8WTR8 489 aaPredicted RBP11.87□□□□□ -0.51
USP43-204ENST00000573955 SPANXCQ9NY87 97 aa11.87□□□□□ -0.51
USP43-204ENST00000573955 TRAV12-3A0A0B4J271 114 aa11.86□□□□□ -0.51
USP43-204ENST00000573955 K7EQG2 157 aa11.86□□□□□ -0.51
USP43-204ENST00000573955 LEPP41159 167 aa11.86□□□□□ -0.51
USP43-204ENST00000573955 KLK5Q9Y337 293 aaPredicted RBP11.86□□□□□ -0.51
USP43-204ENST00000573955 UQCRQO14949 82 aa11.85□□□□□ -0.51
USP43-204ENST00000573955 F8P00451 2351 aa11.85□□□□□ -0.51
USP43-204ENST00000573955 BAHCC1Q9P281 2608 aa11.84□□□□□ -0.51
USP43-204ENST00000573955 MRPL35Q9NZE8 188 aaKnown RBP11.84□□□□□ -0.51
USP43-204ENST00000573955 PHLDA3Q9Y5J5 127 aa11.84□□□□□ -0.51
USP43-204ENST00000573955 SRSF9Q13242 221 aaKnown RBP eCLIP11.84□□□□□ -0.51
USP43-204ENST00000573955 TMEM86BQ8N661 226 aa11.84□□□□□ -0.51
USP43-204ENST00000573955 ZNRF2Q8NHG8 242 aa11.84□□□□□ -0.51
USP43-204ENST00000573955 C4orf3Q8WVX3 66 aa11.84□□□□□ -0.51
USP43-204ENST00000573955 A0A0J9YX75 114 aa11.83□□□□□ -0.52
USP43-204ENST00000573955 FAM236AA0A1B0GUQ0 79 aa11.83□□□□□ -0.52
USP43-204ENST00000573955 FAM236BA0A1B0GV22 79 aa11.83□□□□□ -0.52
USP43-204ENST00000573955 SPINK13Q1W4C9 94 aa11.83□□□□□ -0.52
USP43-204ENST00000573955 C2CD3Q4AC94 2353 aa11.83□□□□□ -0.52
USP43-204ENST00000573955 KLLNB2CW77 178 aa11.83□□□□□ -0.52
USP43-204ENST00000573955 LINC00526Q96FQ7 95 aa11.83□□□□□ -0.52
USP43-204ENST00000573955 ZNF56Q15929 161 aa11.82□□□□□ -0.52
USP43-204ENST00000573955 TRPT1Q86TN4 253 aaKnown RBP11.82□□□□□ -0.52
USP43-204ENST00000573955 TRBV7-7A0A0K0K1E9 115 aa11.82□□□□□ -0.52
USP43-204ENST00000573955 KNCNA6PVL3 124 aa11.82□□□□□ -0.52
USP43-204ENST00000573955 APRG1Q8IVJ8 170 aa11.82□□□□□ -0.52
USP43-204ENST00000573955 C14orf178Q8N769 122 aaPredicted RBP11.82□□□□□ -0.52
USP43-204ENST00000573955 CD28P10747 220 aa11.81□□□□□ -0.52
USP43-204ENST00000573955 RNASE3P12724 160 aaKnown RBP11.81□□□□□ -0.52
USP43-204ENST00000573955 NDUFA11Q86Y39 141 aa11.81□□□□□ -0.52
USP43-204ENST00000573955 TMEM61Q8N0U2 210 aa11.81□□□□□ -0.52
USP43-204ENST00000573955 LY6G6DO95868 133 aa11.81□□□□□ -0.52
USP43-204ENST00000573955 TENM1Q9UKZ4 2725 aa11.8□□□□□ -0.52
USP43-204ENST00000573955 TRGV11A0A075B6L2 103 aa11.8□□□□□ -0.52
USP43-204ENST00000573955 MGPP08493 103 aa11.8□□□□□ -0.52
USP43-204ENST00000573955 RPL13AP40429 203 aaKnown RBP11.8□□□□□ -0.52
USP43-204ENST00000573955 DEFB131AP59861 70 aa11.8□□□□□ -0.52
USP43-204ENST00000573955 PMVKQ15126 192 aa11.8□□□□□ -0.52
USP43-204ENST00000573955 GAGE2AQ6NT46 116 aa11.8□□□□□ -0.52
USP43-204ENST00000573955 TEX49A0A1B0GTD5 131 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 PLNP26678 52 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 DYNLRB2Q8TF09 96 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 PEMTQ9UBM1 199 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 MUC4Q99102 2169 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 NOTCH3Q9UM47 2321 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 IGHV4-4A0A075B6R2 117 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 HRCT1Q6UXD1 115 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 SCGB1D4Q6XE38 83 aa11.79□□□□□ -0.52
USP43-204ENST00000573955 C4orf26Q17RF5 130 aa11.78□□□□□ -0.52
USP43-204ENST00000573955 JPT2Q9H910 190 aa11.78□□□□□ -0.52
USP43-204ENST00000573955 HTN1P15515 57 aa11.77□□□□□ -0.52
USP43-204ENST00000573955 SPANXDQ9BXN6 97 aa11.77□□□□□ -0.52
USP43-204ENST00000573955 H3BMM0 161 aa11.77□□□□□ -0.53
USP43-204ENST00000573955 NRACQ8N912 160 aa11.77□□□□□ -0.53
USP43-204ENST00000573955 UBE2WQ96B02 151 aa11.77□□□□□ -0.53
USP43-204ENST00000573955 VWFP04275 2813 aa11.77□□□□□ -0.53
USP43-204ENST00000573955 INAFM1C9JVW0 142 aa11.76□□□□□ -0.53
USP43-204ENST00000573955 POM121L12Q8N7R1 296 aa11.76□□□□□ -0.53
USP43-204ENST00000573955 LINC01006Q8NI28 216 aa11.76□□□□□ -0.53
USP43-204ENST00000573955 NXT2Q9NPJ8 142 aaKnown RBP11.76□□□□□ -0.53
USP43-204ENST00000573955 ATRQ13535 2644 aa11.76□□□□□ -0.53
USP43-204ENST00000573955 LINC01546A6NGU7 62 aa11.76□□□□□ -0.53
USP43-204ENST00000573955 RPL39LQ96EH5 51 aaKnown RBP11.75□□□□□ -0.53
USP43-204ENST00000573955 A0A087WWL8 130 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms