RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 RNASE3P12724 160 aaKnown RBP11.46□□□□□ -0.57
CIITA-204ENST00000570546 C1orf43Q9BWL3 253 aa11.46□□□□□ -0.57
CIITA-204ENST00000570546 MRPS12O15235 138 aaKnown RBP11.46□□□□□ -0.57
CIITA-204ENST00000570546 DEFB105AQ8NG35 78 aa11.46□□□□□ -0.57
CIITA-204ENST00000570546 CLPSL1A2RUU4 121 aa11.46□□□□□ -0.58
CIITA-204ENST00000570546 SPANXCQ9NY87 97 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 CXCL5P42830 114 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 C10orf99Q6UWK7 81 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 CDKN2A-AS1Q9UH64 79 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 TRBV27A0A0K0K1C4 114 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 Q9HAA7 133 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 IGHV4-31P0DP07 118 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 DEFB114Q30KQ6 69 aa11.45□□□□□ -0.58
CIITA-204ENST00000570546 ATOX1O00244 68 aa11.44□□□□□ -0.58
CIITA-204ENST00000570546 ANKHD1Q8IWZ3 2542 aaKnown RBP11.44□□□□□ -0.58
CIITA-204ENST00000570546 CFAP126Q5VTH2 177 aa11.44□□□□□ -0.58
CIITA-204ENST00000570546 CNFNQ9BYD5 112 aa11.44□□□□□ -0.58
CIITA-204ENST00000570546 TRBV6-5A0A0K0K1A5 114 aa11.44□□□□□ -0.58
CIITA-204ENST00000570546 DEFB4AO15263 64 aa11.44□□□□□ -0.58
CIITA-204ENST00000570546 MT-ATP8P03928 68 aa11.44□□□□□ -0.58
CIITA-204ENST00000570546 DEFB135Q30KP9 77 aa11.43□□□□□ -0.58
CIITA-204ENST00000570546 TANC2Q9HCD6 1990 aa11.43□□□□□ -0.58
CIITA-204ENST00000570546 A0A1B0GX51 115 aa11.43□□□□□ -0.58
CIITA-204ENST00000570546 PROK1P58294 105 aa11.43□□□□□ -0.58
CIITA-204ENST00000570546 RPL18AQ02543 176 aaKnown RBP11.43□□□□□ -0.58
CIITA-204ENST00000570546 TEX49A0A1B0GTD5 131 aa11.43□□□□□ -0.58
CIITA-204ENST00000570546 JMJD7-PLA2G4BH0Y9G9 81 aa11.42□□□□□ -0.58
CIITA-204ENST00000570546 PSMB8P28062 276 aa11.42□□□□□ -0.58
CIITA-204ENST00000570546 EXPH5Q8NEV8 1989 aa11.42□□□□□ -0.58
CIITA-204ENST00000570546 EML5Q05BV3 1969 aa11.42□□□□□ -0.58
CIITA-204ENST00000570546 TSHBP01222 138 aa11.41□□□□□ -0.58
CIITA-204ENST00000570546 PRO0255Q9UI72 69 aa11.41□□□□□ -0.58
CIITA-204ENST00000570546 KLLNB2CW77 178 aa11.41□□□□□ -0.58
CIITA-204ENST00000570546 NDUFA1O15239 70 aa11.41□□□□□ -0.58
CIITA-204ENST00000570546 SPAG11BQ08648 103 aa11.41□□□□□ -0.58
CIITA-204ENST00000570546 HIST2H2BDQ6DRA6 164 aa11.41□□□□□ -0.58
CIITA-204ENST00000570546 hADV29S1A0JD25 119 aa11.4□□□□□ -0.58
CIITA-204ENST00000570546 TRIAP1O43715 76 aa11.4□□□□□ -0.58
CIITA-204ENST00000570546 TRAV26-1A0A087WT03 109 aa11.4□□□□□ -0.58
CIITA-204ENST00000570546 H3BQ85 93 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 PYGO1Q9Y3Y4 419 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 PLXNB1O43157 2135 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 ZMAT4Q9H898 229 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 TTC28Q96AY4 2481 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 CDSNQ15517 529 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 LRRC75A-AS1Q8N1F1 130 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 LINC00308Q8TCZ7 52 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 C14orf132Q9NPU4 83 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 TRBV30A0A0K0K1B3 111 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 SMIM20Q8N5G0 67 aa11.39□□□□□ -0.59
CIITA-204ENST00000570546 POLR2KP53803 58 aaKnown RBP11.38□□□□□ -0.59
CIITA-204ENST00000570546 ETDCA0A1B0GVM5 59 aa11.38□□□□□ -0.59
CIITA-204ENST00000570546 KLK12Q9UKR0 248 aa11.38□□□□□ -0.59
CIITA-204ENST00000570546 IGLV1-40P01703 118 aa11.38□□□□□ -0.59
CIITA-204ENST00000570546 LINC00643Q86TS7 51 aa11.38□□□□□ -0.59
CIITA-204ENST00000570546 C9orf85Q96MD7 179 aa11.38□□□□□ -0.59
CIITA-204ENST00000570546 TIRAPP58753 221 aa11.38□□□□□ -0.59
CIITA-204ENST00000570546 Q6ZS46 218 aa11.38□□□□□ -0.59
CIITA-204ENST00000570546 H7C423 109 aa11.37□□□□□ -0.59
CIITA-204ENST00000570546 TMEM256-PLSCR3K7ERE1 68 aa11.37□□□□□ -0.59
CIITA-204ENST00000570546 RNF183Q96D59 192 aa11.37□□□□□ -0.59
CIITA-204ENST00000570546 UBE2BP63146 152 aa11.37□□□□□ -0.59
CIITA-204ENST00000570546 FUSP35637 526 aaKnown RBP eCLIP11.36□□□□□ -0.59
CIITA-204ENST00000570546 ZNF702PQ9H963 129 aa11.36□□□□□ -0.59
CIITA-204ENST00000570546 MRAPQ8TCY5 172 aa11.36□□□□□ -0.59
CIITA-204ENST00000570546 DCANP1Q8TF63 244 aa11.36□□□□□ -0.59
CIITA-204ENST00000570546 DIRC1Q969H9 104 aa11.36□□□□□ -0.59
CIITA-204ENST00000570546 MUC6Q6W4X9 2439 aa11.36□□□□□ -0.59
CIITA-204ENST00000570546 NACAE9PAV3 2078 aa11.35□□□□□ -0.59
CIITA-204ENST00000570546 A8MZ25 164 aa11.35□□□□□ -0.59
CIITA-204ENST00000570546 CRYGDP07320 174 aa11.35□□□□□ -0.59
CIITA-204ENST00000570546 NDUFV3P56181 108 aaKnown RBP11.35□□□□□ -0.59
CIITA-204ENST00000570546 RBM3P98179 157 aaKnown RBP11.35□□□□□ -0.59
CIITA-204ENST00000570546 INSL3P51460 131 aa11.34□□□□□ -0.59
CIITA-204ENST00000570546 PSMG3-AS1Q96PY0 264 aa11.34□□□□□ -0.59
CIITA-204ENST00000570546 F8W735 103 aaPredicted RBP11.34□□□□□ -0.59
CIITA-204ENST00000570546 LINC00269Q8N2A0 174 aa11.34□□□□□ -0.59
CIITA-204ENST00000570546 GOLGB1Q14789 3259 aaKnown RBP11.34□□□□□ -0.59
CIITA-204ENST00000570546 PIK3CD-AS1Q5SR53 167 aa11.33□□□□□ -0.59
CIITA-204ENST00000570546 Q6ZSV7 163 aa11.33□□□□□ -0.6
CIITA-204ENST00000570546 UBE2D4Q9Y2X8 147 aa11.32□□□□□ -0.6
CIITA-204ENST00000570546 IGHV4-28A0A0C4DH34 117 aa11.32□□□□□ -0.6
CIITA-204ENST00000570546 TIMM17BO60830 172 aa11.32□□□□□ -0.6
CIITA-204ENST00000570546 REG3AQ06141 175 aa11.32□□□□□ -0.6
CIITA-204ENST00000570546 COX8CQ7Z4L0 72 aa11.32□□□□□ -0.6
CIITA-204ENST00000570546 DSCAMO60469 2012 aa11.31□□□□□ -0.6
CIITA-204ENST00000570546 NREPQ16612 68 aa11.31□□□□□ -0.6
CIITA-204ENST00000570546 IGIPA6NJ69 53 aa11.31□□□□□ -0.6
CIITA-204ENST00000570546 IBA57-AS1B1ANH7 110 aa11.31□□□□□ -0.6
CIITA-204ENST00000570546 C18orf65Q6ZTR6 163 aa11.31□□□□□ -0.6
CIITA-204ENST00000570546 TRBV6-8A0A0A6YYG3 113 aa11.3□□□□□ -0.6
CIITA-204ENST00000570546 TRBV6-4A0A1B0GX49 114 aa11.3□□□□□ -0.6
CIITA-204ENST00000570546 CCL18P55774 89 aa11.3□□□□□ -0.6
CIITA-204ENST00000570546 A0A096LNJ9 63 aa11.3□□□□□ -0.6
CIITA-204ENST00000570546 FAM222AQ5U5X8 452 aa11.3□□□□□ -0.6
CIITA-204ENST00000570546 MRGPRG-AS1Q2M3A8 158 aa11.3□□□□□ -0.6
CIITA-204ENST00000570546 WFDC11Q8NEX6 87 aa11.3□□□□□ -0.6
CIITA-204ENST00000570546 CHCHD10Q8WYQ3 142 aaPredicted RBP11.3□□□□□ -0.6
CIITA-204ENST00000570546 PRM2P04554 102 aa11.29□□□□□ -0.6
CIITA-204ENST00000570546 UFSP1Q6NVU6 142 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms