RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SMIM7Q9BQ49 75 aa7.08□□□□□ -1.28
VPS53-207ENST00000570510 JPT2Q9H910 190 aa7.08□□□□□ -1.28
VPS53-207ENST00000570510 OSTCQ9NRP0 149 aa7.08□□□□□ -1.28
VPS53-207ENST00000570510 KIF25-AS1Q9Y6Z4 181 aa7.08□□□□□ -1.28
VPS53-207ENST00000570510 A0A087WWL8 130 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 ZNF727A8MUV8 499 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 TMEM262E9PQX1 116 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 SRP19P09132 144 aaKnown RBP7.07□□□□□ -1.28
VPS53-207ENST00000570510 UBE2D3P61077 147 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 UBE2D2P62837 147 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 REG3GQ6UW15 175 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 SMIM15Q7Z3B0 74 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 LINC01551Q86U37 167 aa7.07□□□□□ -1.28
VPS53-207ENST00000570510 A0A0J9YXV3 536 aa7.06□□□□□ -1.28
VPS53-207ENST00000570510 K7EN84 100 aa7.06□□□□□ -1.28
VPS53-207ENST00000570510 GATCO43716 136 aaKnown RBP7.06□□□□□ -1.28
VPS53-207ENST00000570510 RAB14P61106 215 aa7.06□□□□□ -1.28
VPS53-207ENST00000570510 TMEM241Q24JQ0 296 aa7.06□□□□□ -1.28
VPS53-207ENST00000570510 LYZL1Q6UWQ5 148 aa7.06□□□□□ -1.28
VPS53-207ENST00000570510 C14orf178Q8N769 122 aaPredicted RBP7.06□□□□□ -1.28
VPS53-207ENST00000570510 C15orf54Q8N8G6 183 aa7.06□□□□□ -1.28
VPS53-207ENST00000570510 PANO1I0J062 215 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 PHOX2AO14813 284 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 PRSS1P07477 247 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 NTF3P20783 257 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 SMCPP49901 116 aaPredicted RBP7.05□□□□□ -1.28
VPS53-207ENST00000570510 ZNF56Q15929 161 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 ATRAIDQ6UW56 229 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 SDIM1Q6ZPB5 146 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 TSKUQ8WUA8 353 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 GTSF1Q8WW33 167 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 BORCS7Q96B45 105 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 NAT8Q9UHE5 227 aa7.05□□□□□ -1.28
VPS53-207ENST00000570510 F5H697 171 aa7.04□□□□□ -1.28
VPS53-207ENST00000570510 M0QY20 66 aa7.04□□□□□ -1.28
VPS53-207ENST00000570510 NEXN-AS1Q8NBZ9 246 aa7.04□□□□□ -1.28
VPS53-207ENST00000570510 RNF185Q96GF1 192 aa7.04□□□□□ -1.28
VPS53-207ENST00000570510 PGLYRP4Q96LB8 373 aa7.04□□□□□ -1.28
VPS53-207ENST00000570510 RNASE7Q9H1E1 156 aaKnown RBP7.04□□□□□ -1.28
VPS53-207ENST00000570510 A0A087WYN8 130 aa7.03□□□□□ -1.28
VPS53-207ENST00000570510 TRBV6-8A0A0A6YYG3 113 aa7.03□□□□□ -1.28
VPS53-207ENST00000570510 A0A1B0GW15 77 aa7.03□□□□□ -1.28
VPS53-207ENST00000570510 ANGP03950 147 aaKnown RBP7.03□□□□□ -1.28
VPS53-207ENST00000570510 RASL11AQ6T310 242 aa7.03□□□□□ -1.28
VPS53-207ENST00000570510 TPPP3Q9BW30 176 aa7.03□□□□□ -1.28
VPS53-207ENST00000570510 NIT2Q9NQR4 276 aa7.03□□□□□ -1.28
VPS53-207ENST00000570510 IGHV3-64A0A075B6Q5 118 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.02□□□□□ -1.29
VPS53-207ENST00000570510 A0A1B0GUT8 65 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 PPP1R17O96001 155 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 GZMBP10144 247 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 PNRC1Q12796 327 aaPredicted RBP7.02□□□□□ -1.29
VPS53-207ENST00000570510 TWIST1Q15672 202 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 IQCJQ1A5X6 159 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 CLRN3Q8NCR9 226 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 ISOC2Q96AB3 205 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 AP5S1Q9NUS5 200 aa7.02□□□□□ -1.29
VPS53-207ENST00000570510 NCR2O95944 276 aa7.01□□□□□ -1.29
VPS53-207ENST00000570510 CEBPGP53567 150 aa7.01□□□□□ -1.29
VPS53-207ENST00000570510 KRTAP10-8P60410 259 aa7.01□□□□□ -1.29
VPS53-207ENST00000570510 ENHOQ6UWT2 76 aa7.01□□□□□ -1.29
VPS53-207ENST00000570510 TMEM191AQ9H0A3 160 aa7.01□□□□□ -1.29
VPS53-207ENST00000570510 TRBV25-1A0A075B6N4 114 aa7□□□□□ -1.29
VPS53-207ENST00000570510 A0A1B0GUV1 79 aa7□□□□□ -1.29
VPS53-207ENST00000570510 hDV102S1A0JD36 115 aa7□□□□□ -1.29
VPS53-207ENST00000570510 HIGD1CA8MV81 97 aa7□□□□□ -1.29
VPS53-207ENST00000570510 PPP1R2P9O14990 202 aa7□□□□□ -1.29
VPS53-207ENST00000570510 S100A8P05109 93 aa7□□□□□ -1.29
VPS53-207ENST00000570510 RPL23P62829 140 aaKnown RBP7□□□□□ -1.29
VPS53-207ENST00000570510 RIGQ13278 110 aa7□□□□□ -1.29
VPS53-207ENST00000570510 CIRBPQ14011 172 aaKnown RBP7□□□□□ -1.29
VPS53-207ENST00000570510 MIAQ16674 131 aa7□□□□□ -1.29
VPS53-207ENST00000570510 CLLU1Q5K131 121 aa7□□□□□ -1.29
VPS53-207ENST00000570510 SUMO4Q6EEV6 95 aa7□□□□□ -1.29
VPS53-207ENST00000570510 NAT8BQ9UHF3 227 aa7□□□□□ -1.29
VPS53-207ENST00000570510 V9GYV3 84 aa7□□□□□ -1.29
VPS53-207ENST00000570510 IGHV1-24A0A0C4DH33 117 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 TRBV6-5A0A0K0K1A5 114 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 H7C423 109 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 CHTF8P0CG12 524 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 UQCC3Q6UW78 93 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 SPINK6Q6UWN8 80 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 MRAP2Q96G30 205 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 Q9UF83 564 aa6.99□□□□□ -1.29
VPS53-207ENST00000570510 MUC21A0A0G2JKD1 596 aa6.98□□□□□ -1.29
VPS53-207ENST00000570510 MUC21A0A140T8X8 626 aa6.98□□□□□ -1.29
VPS53-207ENST00000570510 SMIM27A0A1W2PRY6 76 aa6.98□□□□□ -1.29
VPS53-207ENST00000570510 MGPP08493 103 aa6.98□□□□□ -1.29
VPS53-207ENST00000570510 PRR3P79522 188 aaKnown RBP6.98□□□□□ -1.29
VPS53-207ENST00000570510 LINC00862A6NCI5 91 aa6.97□□□□□ -1.29
VPS53-207ENST00000570510 C9JQL5 133 aa6.97□□□□□ -1.29
VPS53-207ENST00000570510 CNBPP62633 177 aaKnown RBP6.97□□□□□ -1.29
VPS53-207ENST00000570510 COTL1Q14019 142 aa6.97□□□□□ -1.29
VPS53-207ENST00000570510 ADIRFQ15847 76 aa6.97□□□□□ -1.29
VPS53-207ENST00000570510 SPACA4Q8TDM5 124 aa6.97□□□□□ -1.29
VPS53-207ENST00000570510 CHCHD5Q9BSY4 110 aa6.97□□□□□ -1.29
VPS53-207ENST00000570510 PLAC8Q9NZF1 115 aa6.97□□□□□ -1.29
VPS53-207ENST00000570510 TCAPO15273 167 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 MAJINQ3KP22 176 aa6.96□□□□□ -1.3
VPS53-207ENST00000570510 MPV17L2Q567V2 206 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms