RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TRGV5A0A0B4J1U4 118 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 MUC21A0A0G2JKD1 596 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 C7orf66A4D0T2 115 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 H3BQ85 93 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 GEMIN2O14893 280 aaKnown RBP1.82□□□□□ -2.12
VPS35-209ENST00000568642 HRASP01112 189 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 NPYP01303 97 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 MT-ATP8P03928 68 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 SPINK8P0C7L1 97 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 T-ENOLP0DO92 83 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 CRYGAP11844 174 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 COX6A1P12074 109 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 ZNF19P17023 458 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 RPL28P46779 137 aaKnown RBP1.82□□□□□ -2.12
VPS35-209ENST00000568642 XCL1P47992 114 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 NUDT2P50583 147 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 KRTAP10-12P60413 245 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 S100A10P60903 97 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 C15orf32Q32M92 178 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 C14orf177Q52M58 125 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 SPRNQ5BIV9 151 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 LYZL1Q6UWQ5 148 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 LYZL2Q7Z4W2 148 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 IFT20Q8IY31 132 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 AQP3Q92482 292 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 NABP2Q9BQ15 211 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 SEC11CQ9BY50 192 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 DUSP21Q9H596 190 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 BCL2L10Q9HD36 194 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 TAS2R8Q9NYW2 309 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 CCDC167Q9P0B6 97 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 SCP2D1Q9UJQ7 156 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 HHLA3Q9XRX5 114 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 CHCHD2Q9Y6H1 151 aaPredicted RBP1.82□□□□□ -2.12
VPS35-209ENST00000568642 DNAH2Q9P225 4427 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 VPS13DQ5THJ4 4388 aa1.82□□□□□ -2.12
VPS35-209ENST00000568642 IGHV3-73A0A0B4J1V6 119 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 A0A0B4J2C4 111 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 E7EQL1 145 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 RPL36A-HNRNPH2H7BZ11 118 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 M0R2P5 195 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 RER1O15258 196 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 CPSF4O95639 269 aaKnown RBP1.81□□□□□ -2.12
VPS35-209ENST00000568642 SLC25A4P12235 298 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 ZNF14P17017 642 aaPredicted RBP1.81□□□□□ -2.12
VPS35-209ENST00000568642 COL8A2P25067 703 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 S100A4P26447 101 aaKnown RBP1.81□□□□□ -2.12
VPS35-209ENST00000568642 FUSP35637 526 aaKnown RBP eCLIP1.81□□□□□ -2.12
VPS35-209ENST00000568642 TPPP2P59282 170 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 ROMO1P60602 79 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 MYL5Q02045 173 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 CLLU1Q5K131 121 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 MIC13Q5XKP0 118 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 Q8N814 137 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 IMMP1LQ96LU5 166 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 IMMP2LQ96T52 175 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 BPESC1Q9GZL8 116 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 RERGLQ9H628 205 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 TMEM14AQ9Y6G1 99 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 AGRNO00468 2067 aa1.81□□□□□ -2.12
VPS35-209ENST00000568642 IGKV2D-26A0A0A0MRZ7 120 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 TRAV1-1A0A0B4J248 108 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 A0A1B0GU33 70 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 H3BT86 120 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 CGAP01215 116 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 IGLC1P0CG04 106 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 CD24P25063 80 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 GUCA1AP43080 201 aaPredicted RBP1.8□□□□□ -2.12
VPS35-209ENST00000568642 EFNA4P52798 201 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 FXYD7P58549 80 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 ZNF90Q03938 601 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 DEFB116Q30KQ4 102 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 KRTAP20-1Q3LI63 56 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 Q5VSD8 79 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 LYPD6Q86Y78 171 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 FAM19A2Q8N3H0 131 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 ST20-AS1Q8NBB2 130 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 OR4B1Q8NGF8 309 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 YPEL2Q96QA6 119 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 SCGB3A1Q96QR1 104 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 DSCR8Q96T75 97 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 GFRA4Q9GZZ7 299 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 TXNL4BQ9NX01 149 aaKnown RBP1.8□□□□□ -2.12
VPS35-209ENST00000568642 SERP1Q9Y6X1 66 aa1.8□□□□□ -2.12
VPS35-209ENST00000568642 NEBP20929 6669 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 TRGV10A0A0A0MS01 117 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 A0A0J9YWU9 116 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 A0A1W2PQD3 144 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 BBIP1A8MTZ0 92 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 PHOX2AO14813 284 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 GNRH2O43555 120 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 MSMBP08118 114 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 AKR1C2P52895 323 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 BLCAPP62952 87 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 KLRD1Q13241 179 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 CDK5R1Q15078 307 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 FAM27BQ5VT28 67 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 NOXRED1Q6NXP6 359 aa1.79□□□□□ -2.12
VPS35-209ENST00000568642 ZNF705AQ6ZN79 300 aaPredicted RBP1.79□□□□□ -2.12
VPS35-209ENST00000568642 Q6ZQT0 140 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms