RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CFC1BP0CG36 223 aa8.41□□□□□ -1.06
CUX1-218ENST00000560541 CFC1P0CG37 223 aa8.41□□□□□ -1.06
CUX1-218ENST00000560541 LGALS9O00182 355 aa8.41□□□□□ -1.06
CUX1-218ENST00000560541 MED14OSP0DP75 135 aa8.41□□□□□ -1.06
CUX1-218ENST00000560541 APRG1Q8IVJ8 170 aa8.41□□□□□ -1.06
CUX1-218ENST00000560541 IGHV3-64A0A075B6Q5 118 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 IGHV4-30-2A0A087WSY4 118 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 TINCRA0A1B0GVN0 87 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 A6NDX4 124 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 PPP1R17O96001 155 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 POLR2KP53803 58 aaKnown RBP8.4□□□□□ -1.06
CUX1-218ENST00000560541 ZNRF2Q8NHG8 242 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 LINC00526Q96FQ7 95 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 CACNA1AO00555 2505 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 MRAPQ8TCY5 172 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 DCANP1Q8TF63 244 aa8.4□□□□□ -1.06
CUX1-218ENST00000560541 LINC01619G3V211 115 aa8.4□□□□□ -1.07
CUX1-218ENST00000560541 RS1O15537 224 aa8.4□□□□□ -1.07
CUX1-218ENST00000560541 AVPP01185 164 aa8.4□□□□□ -1.07
CUX1-218ENST00000560541 C2orf82Q6UX34 121 aa8.4□□□□□ -1.07
CUX1-218ENST00000560541 A0A0J9YY99 117 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 VCYO14598 125 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 NXPH4O95158 308 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 LINC01620Q4KN68 170 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 CCL19Q99731 98 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 MYO9AB2RTY4 2548 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 IGHV4OR15-8A0A075B7B6 117 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 A0A087WW49 117 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 SPINK13Q1W4C9 94 aa8.39□□□□□ -1.07
CUX1-218ENST00000560541 IGLV1-40P01703 118 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 HTN1P15515 57 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 DPH3Q96FX2 82 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 PRO1854Q9UHT4 67 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 POM121L12Q8N7R1 296 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 C10orf105Q8TEF2 133 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 ACACBO00763 2458 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 H3BUA1 57 aa8.38□□□□□ -1.07
CUX1-218ENST00000560541 Q5XG85 94 aa8.37□□□□□ -1.07
CUX1-218ENST00000560541 FAM208BQ5VWN6 2430 aa8.37□□□□□ -1.07
CUX1-218ENST00000560541 MXRA5Q9NR99 2828 aa8.37□□□□□ -1.07
CUX1-218ENST00000560541 IGHV3-16A0A0C4DH30 117 aa8.37□□□□□ -1.07
CUX1-218ENST00000560541 TRACP01848 142 aa8.37□□□□□ -1.07
CUX1-218ENST00000560541 IGHV3-73A0A0B4J1V6 119 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 IGHV4-59P01825 116 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 MSMBP08118 114 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 RPS28P62857 69 aaKnown RBP8.36□□□□□ -1.07
CUX1-218ENST00000560541 ZNF876PQ49A33 203 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 LINC00336Q6ZUF6 198 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 ZNF580Q9UK33 172 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 DOPEY1Q5JWR5 2465 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 NOTCH3Q9UM47 2321 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 TRBV27A0A0K0K1C4 114 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 J3QQQ9 107 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 TMEM141Q96I45 108 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 TIMM17AQ99595 171 aa8.36□□□□□ -1.07
CUX1-218ENST00000560541 A0A0U1RQV1 116 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 M0QY20 66 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 IGHV3-30P01768 117 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 IGHV3-30-5P0DP03 117 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 LGALS3P17931 250 aaKnown RBP8.35□□□□□ -1.07
CUX1-218ENST00000560541 PAPPA-AS1Q5QFB9 102 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 PYGO1Q9Y3Y4 419 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 TRBV7-7A0A0K0K1E9 115 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 PRM2P04554 102 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 SYNJ2BPP57105 145 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 CFHR3Q02985 330 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 TLN2Q9Y4G6 2542 aa8.35□□□□□ -1.07
CUX1-218ENST00000560541 ANKRD17O75179 2603 aaKnown RBP8.35□□□□□ -1.07
CUX1-218ENST00000560541 COX7CP15954 63 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 A0A0J9YX75 114 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 P0DMU3 169 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 FAM231AP0DMU4 169 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 FAM231CP0DMU5 169 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 SLC25A29Q8N8R3 303 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 MAPK1IP1LQ8NDC0 245 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 C9orf85Q96MD7 179 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 AMELXQ99217 191 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 ZFYVE26Q68DK2 2539 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 ADARB2-AS1A8MUL3 147 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 PSMB8P28062 276 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 SNRPD3P62318 126 aaKnown RBP8.34□□□□□ -1.07
CUX1-218ENST00000560541 ATXN8Q156A1 80 aa8.34□□□□□ -1.07
CUX1-218ENST00000560541 RNASE13Q5GAN3 156 aaKnown RBP8.33□□□□□ -1.08
CUX1-218ENST00000560541 IGHV1OR15-1A0A075B7D0 117 aa8.33□□□□□ -1.08
CUX1-218ENST00000560541 A0A0J9YXV3 536 aa8.33□□□□□ -1.08
CUX1-218ENST00000560541 FAM236DA0A1B0GTK5 79 aa8.33□□□□□ -1.08
CUX1-218ENST00000560541 K7EMT4 169 aa8.33□□□□□ -1.08
CUX1-218ENST00000560541 FAM236CP0DP71 79 aa8.33□□□□□ -1.08
CUX1-218ENST00000560541 DEFB112Q30KQ8 113 aa8.33□□□□□ -1.08
CUX1-218ENST00000560541 PIEZO1Q92508 2521 aa8.33□□□□□ -1.08
CUX1-218ENST00000560541 IGSF10Q6WRI0 2623 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 TRBV10-2A0A0K0K1G8 114 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 PROK1P58294 105 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 ZNF415Q09FC8 603 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 LRRK2Q5S007 2527 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 IGHV3-33P01772 117 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 RPL13AP40429 203 aaKnown RBP8.32□□□□□ -1.08
CUX1-218ENST00000560541 ABCA12Q86UK0 2595 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 TRBV6-5A0A0K0K1A5 114 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 KNCNA6PVL3 124 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms