RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TGFAP01135 160 aa11.97□□□□□ -0.49
SHMT2-232ENST00000557487 COX6CP09669 75 aa11.97□□□□□ -0.49
SHMT2-232ENST00000557487 Q6Q795 121 aa11.96□□□□□ -0.49
SHMT2-232ENST00000557487 CELSR2Q9HCU4 2923 aa11.96□□□□□ -0.5
SHMT2-232ENST00000557487 B4DSR2 109 aa11.96□□□□□ -0.5
SHMT2-232ENST00000557487 IGKV3-20P01619 116 aa11.96□□□□□ -0.5
SHMT2-232ENST00000557487 TNFRSF18Q9Y5U5 241 aa11.96□□□□□ -0.5
SHMT2-232ENST00000557487 FBN2P35556 2912 aa11.95□□□□□ -0.5
SHMT2-232ENST00000557487 IGHV3-64A0A075B6Q5 118 aa11.95□□□□□ -0.5
SHMT2-232ENST00000557487 H3BT86 120 aa11.95□□□□□ -0.5
SHMT2-232ENST00000557487 IFITM1P13164 125 aa11.95□□□□□ -0.5
SHMT2-232ENST00000557487 MIAQ16674 131 aa11.95□□□□□ -0.5
SHMT2-232ENST00000557487 SPXQ9BT56 116 aa11.95□□□□□ -0.5
SHMT2-232ENST00000557487 A8MTW9 85 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 H7C2G1 150 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 SNCGO76070 127 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 NTN5Q8WTR8 489 aaPredicted RBP11.94□□□□□ -0.5
SHMT2-232ENST00000557487 VSIG2Q96IQ7 327 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 ANAPC13Q9BS18 74 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 NDUFA12Q9UI09 145 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 TRIAP1O43715 76 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 MRPL23Q16540 153 aaKnown RBP11.94□□□□□ -0.5
SHMT2-232ENST00000557487 DNAJC30Q96LL9 226 aa11.94□□□□□ -0.5
SHMT2-232ENST00000557487 ABCA2Q9BZC7 2435 aa11.93□□□□□ -0.5
SHMT2-232ENST00000557487 ELANEP08246 267 aa11.93□□□□□ -0.5
SHMT2-232ENST00000557487 NRGNQ92686 78 aa11.93□□□□□ -0.5
SHMT2-232ENST00000557487 FAM104AQ969W3 186 aa11.93□□□□□ -0.5
SHMT2-232ENST00000557487 ICOSQ9Y6W8 199 aa11.93□□□□□ -0.5
SHMT2-232ENST00000557487 CRYBG3Q68DQ2 2970 aa11.93□□□□□ -0.5
SHMT2-232ENST00000557487 H3BMM0 161 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 ATP5J2P56134 94 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 GAGE2BQ13066 116 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 GAGE2EQ4V326 116 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 UBE2WQ96B02 151 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 GAGE2DQ9UEU5 116 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 IGHV4-30-2A0A087WSY4 118 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 TRAV8-4A0A0B4J246 113 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 DSCR9P59020 149 aa11.92□□□□□ -0.5
SHMT2-232ENST00000557487 PRSS2P07478 247 aa11.91□□□□□ -0.5
SHMT2-232ENST00000557487 APCP25054 2843 aa11.91□□□□□ -0.5
SHMT2-232ENST00000557487 SYNJ2BPP57105 145 aa11.9□□□□□ -0.5
SHMT2-232ENST00000557487 ZNF415Q09FC8 603 aa11.9□□□□□ -0.5
SHMT2-232ENST00000557487 TMEM95Q3KNT9 176 aa11.9□□□□□ -0.5
SHMT2-232ENST00000557487 LINC00467Q9BRT7 94 aa11.9□□□□□ -0.5
SHMT2-232ENST00000557487 UBE2D4Q9Y2X8 147 aa11.9□□□□□ -0.5
SHMT2-232ENST00000557487 TIRAPP58753 221 aa11.9□□□□□ -0.51
SHMT2-232ENST00000557487 C2orf82Q6UX34 121 aa11.9□□□□□ -0.51
SHMT2-232ENST00000557487 UBE2E2Q96LR5 201 aa11.9□□□□□ -0.51
SHMT2-232ENST00000557487 CHCHD7Q9BUK0 85 aa11.9□□□□□ -0.51
SHMT2-232ENST00000557487 ITPR2Q14571 2701 aa11.89□□□□□ -0.51
SHMT2-232ENST00000557487 FAM240AA0A1B0GVK7 77 aa11.89□□□□□ -0.51
SHMT2-232ENST00000557487 CLUHP3Q96NS8 147 aa11.89□□□□□ -0.51
SHMT2-232ENST00000557487 CENPEQ02224 2701 aa11.89□□□□□ -0.51
SHMT2-232ENST00000557487 GAGE5Q13069 117 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 GAGE6Q13070 117 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 TMEM61Q8N0U2 210 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 COPS9Q8WXC6 57 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 BEX4Q9NWD9 120 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-232ENST00000557487 ABCA12Q86UK0 2595 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 IGLV5-45A0A087WSX0 123 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 TRAV8-3A0A0A6YYJ7 113 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 J3QLI3 93 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 DEFB121Q5J5C9 76 aa11.88□□□□□ -0.51
SHMT2-232ENST00000557487 PDZD2O15018 2839 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 LST1O00453 97 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 AVPP01185 164 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 IGHV4-59P01825 116 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 HOXD3P31249 432 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-232ENST00000557487 DEFB113Q30KQ7 82 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 DEFB112Q30KQ8 113 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 ADAMTSL4-AS1Q5T5F5 129 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 CSMD1Q96PZ7 3565 aa11.87□□□□□ -0.51
SHMT2-232ENST00000557487 NOTCH2Q04721 2471 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 H7C423 109 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 NDUFA1O15239 70 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 RBMY1A1P0DJD3 496 aaKnown RBP11.86□□□□□ -0.51
SHMT2-232ENST00000557487 RBMY1CP0DJD4 496 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 CIRBPQ14011 172 aaKnown RBP11.86□□□□□ -0.51
SHMT2-232ENST00000557487 RBMY1FQ15415 496 aaKnown RBP11.86□□□□□ -0.51
SHMT2-232ENST00000557487 DUX3Q96PT4 197 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 TEX49A0A1B0GTD5 131 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 ADARB2-AS1A8MUL3 147 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 IGHV3-53P01767 116 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 LRRC75A-AS1Q8N1F1 130 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 SVIPQ8NHG7 77 aa11.86□□□□□ -0.51
SHMT2-232ENST00000557487 NDUFV3P56181 108 aaKnown RBP11.85□□□□□ -0.51
SHMT2-232ENST00000557487 TTC32Q5I0X7 151 aa11.85□□□□□ -0.51
SHMT2-232ENST00000557487 DUX5Q96PT3 197 aa11.85□□□□□ -0.51
SHMT2-232ENST00000557487 BEAN1Q3B7T3 259 aa11.84□□□□□ -0.51
SHMT2-232ENST00000557487 LINC01356Q8N9X3 169 aa11.84□□□□□ -0.51
SHMT2-232ENST00000557487 IGHV3-73A0A0B4J1V6 119 aa11.84□□□□□ -0.51
SHMT2-232ENST00000557487 C10orf99Q6UWK7 81 aa11.84□□□□□ -0.51
SHMT2-232ENST00000557487 DEFB131AP59861 70 aa11.83□□□□□ -0.52
SHMT2-232ENST00000557487 CEMP1Q6PRD7 247 aaPredicted RBP11.83□□□□□ -0.52
SHMT2-232ENST00000557487 PPDPFQ9H3Y8 114 aa11.83□□□□□ -0.52
SHMT2-232ENST00000557487 VPREB3Q9UKI3 123 aa11.83□□□□□ -0.52
SHMT2-232ENST00000557487 TRAV4A0A0B4J268 109 aa11.82□□□□□ -0.52
SHMT2-232ENST00000557487 KNCNA6PVL3 124 aa11.82□□□□□ -0.52
SHMT2-232ENST00000557487 PROK1P58294 105 aa11.82□□□□□ -0.52
SHMT2-232ENST00000557487 C15orf53Q8NAA6 179 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms