RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 I3L3M4 83 aa11.77□□□□□ -0.53
SHMT2-225ENST00000556798 SNAPINO95295 136 aa11.77□□□□□ -0.53
SHMT2-225ENST00000556798 PMCHP20382 165 aa11.77□□□□□ -0.53
SHMT2-225ENST00000556798 TMEM243Q9BU79 118 aa11.77□□□□□ -0.53
SHMT2-225ENST00000556798 TRAV9-1A0A075B6T8 112 aa11.76□□□□□ -0.53
SHMT2-225ENST00000556798 PPP1R17O96001 155 aa11.76□□□□□ -0.53
SHMT2-225ENST00000556798 BTF3P20290 206 aaKnown RBP11.76□□□□□ -0.53
SHMT2-225ENST00000556798 POLR2KP53803 58 aaKnown RBP11.76□□□□□ -0.53
SHMT2-225ENST00000556798 SUMO2P61956 95 aaKnown RBP11.76□□□□□ -0.53
SHMT2-225ENST00000556798 TNP2Q05952 138 aa11.76□□□□□ -0.53
SHMT2-225ENST00000556798 ATRAIDQ6UW56 229 aa11.76□□□□□ -0.53
SHMT2-225ENST00000556798 Q6ZRN7 208 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-225ENST00000556798 Q8N976 141 aa11.76□□□□□ -0.53
SHMT2-225ENST00000556798 KLK12Q9UKR0 248 aa11.76□□□□□ -0.53
SHMT2-225ENST00000556798 TNFRSF6BO95407 300 aa11.75□□□□□ -0.53
SHMT2-225ENST00000556798 TSHBP01222 138 aa11.75□□□□□ -0.53
SHMT2-225ENST00000556798 NPYP01303 97 aa11.75□□□□□ -0.53
SHMT2-225ENST00000556798 APCSP02743 223 aa11.75□□□□□ -0.53
SHMT2-225ENST00000556798 CHCHD7Q9BUK0 85 aa11.75□□□□□ -0.53
SHMT2-225ENST00000556798 LAGE3Q14657 143 aa11.74□□□□□ -0.53
SHMT2-225ENST00000556798 TMEM136Q6ZRR5 245 aa11.74□□□□□ -0.53
SHMT2-225ENST00000556798 NFE4Q86UQ8 179 aa11.74□□□□□ -0.53
SHMT2-225ENST00000556798 ORMDL3Q8N138 153 aa11.74□□□□□ -0.53
SHMT2-225ENST00000556798 PKD1P98161 4303 aa11.73□□□□□ -0.53
SHMT2-225ENST00000556798 TRBV27A0A0K0K1C4 114 aa11.73□□□□□ -0.53
SHMT2-225ENST00000556798 UBE2L6O14933 153 aa11.73□□□□□ -0.53
SHMT2-225ENST00000556798 PPBPP02775 128 aa11.73□□□□□ -0.53
SHMT2-225ENST00000556798 PKIAP61925 76 aa11.73□□□□□ -0.53
SHMT2-225ENST00000556798 RBX1P62877 108 aa11.73□□□□□ -0.53
SHMT2-225ENST00000556798 PRELID3AQ96N28 172 aa11.73□□□□□ -0.53
SHMT2-225ENST00000556798 TRBV24-1A0A075B6N3 115 aa11.72□□□□□ -0.53
SHMT2-225ENST00000556798 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-225ENST00000556798 IGKV2-29A2NJV5 120 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-225ENST00000556798 VCYO14598 125 aa11.72□□□□□ -0.53
SHMT2-225ENST00000556798 ANGP03950 147 aaKnown RBP11.72□□□□□ -0.53
SHMT2-225ENST00000556798 UBE2WQ96B02 151 aa11.72□□□□□ -0.53
SHMT2-225ENST00000556798 C20orf78Q9BR46 151 aa11.72□□□□□ -0.53
SHMT2-225ENST00000556798 ELOBQ15370 118 aa11.71□□□□□ -0.53
SHMT2-225ENST00000556798 CLPSL2Q6UWE3 100 aa11.71□□□□□ -0.53
SHMT2-225ENST00000556798 HECTD4Q9Y4D8 3996 aa11.7□□□□□ -0.54
SHMT2-225ENST00000556798 TGIF2-C20orf24A0A0A6YYL0 155 aa11.7□□□□□ -0.54
SHMT2-225ENST00000556798 A0A1B0GVY2 172 aa11.7□□□□□ -0.54
SHMT2-225ENST00000556798 PHOX2AO14813 284 aa11.7□□□□□ -0.54
SHMT2-225ENST00000556798 FCER1GP30273 86 aa11.7□□□□□ -0.54
SHMT2-225ENST00000556798 SMIM2Q9BVW6 85 aa11.7□□□□□ -0.54
SHMT2-225ENST00000556798 DNAH11Q96DT5 4516 aa11.7□□□□□ -0.54
SHMT2-225ENST00000556798 IGLV4-60A0A075B6I1 120 aa11.69□□□□□ -0.54
SHMT2-225ENST00000556798 TRAV8-3A0A0A6YYJ7 113 aa11.69□□□□□ -0.54
SHMT2-225ENST00000556798 KIAA1644Q3SXP7 199 aa11.69□□□□□ -0.54
SHMT2-225ENST00000556798 C20orf203Q8NBC4 194 aa11.69□□□□□ -0.54
SHMT2-225ENST00000556798 KIR2DL4Q99706 377 aa11.69□□□□□ -0.54
SHMT2-225ENST00000556798 PSCAO43653 123 aa11.68□□□□□ -0.54
SHMT2-225ENST00000556798 HLA-DQA1P01909 254 aa11.68□□□□□ -0.54
SHMT2-225ENST00000556798 CRPP02741 224 aa11.68□□□□□ -0.54
SHMT2-225ENST00000556798 ESDP10768 282 aa11.68□□□□□ -0.54
SHMT2-225ENST00000556798 RPL32P62910 135 aaKnown RBP11.68□□□□□ -0.54
SHMT2-225ENST00000556798 ENHOQ6UWT2 76 aa11.68□□□□□ -0.54
SHMT2-225ENST00000556798 LINC00269Q8N2A0 174 aa11.68□□□□□ -0.54
SHMT2-225ENST00000556798 LOC389332A0A1B0GUA5 103 aa11.67□□□□□ -0.54
SHMT2-225ENST00000556798 FGF6P10767 208 aa11.67□□□□□ -0.54
SHMT2-225ENST00000556798 AMMECR1LQ6DCA0 310 aa11.67□□□□□ -0.54
SHMT2-225ENST00000556798 RNASEKQ6P5S7 137 aaKnown RBP11.67□□□□□ -0.54
SHMT2-225ENST00000556798 GNB1LQ9BYB4 327 aa11.67□□□□□ -0.54
SHMT2-225ENST00000556798 IGKV2D-24A0A075B6R9 120 aa11.66□□□□□ -0.54
SHMT2-225ENST00000556798 A0A1B0GUV1 79 aa11.66□□□□□ -0.54
SHMT2-225ENST00000556798 MAP1LC3AQ9H492 121 aa11.66□□□□□ -0.54
SHMT2-225ENST00000556798 LAMTOR2Q9Y2Q5 125 aa11.66□□□□□ -0.54
SHMT2-225ENST00000556798 H7C423 109 aa11.65□□□□□ -0.54
SHMT2-225ENST00000556798 TCAPO15273 167 aa11.65□□□□□ -0.54
SHMT2-225ENST00000556798 Q0VG73 95 aa11.65□□□□□ -0.54
SHMT2-225ENST00000556798 COX19Q49B96 90 aa11.65□□□□□ -0.54
SHMT2-225ENST00000556798 CBLN2Q8IUK8 224 aa11.65□□□□□ -0.54
SHMT2-225ENST00000556798 REG3AQ06141 175 aa11.64□□□□□ -0.55
SHMT2-225ENST00000556798 RMI2Q96E14 147 aa11.64□□□□□ -0.55
SHMT2-225ENST00000556798 TM2D2Q9BX73 214 aa11.64□□□□□ -0.55
SHMT2-225ENST00000556798 MRPL18Q9H0U6 180 aaKnown RBP11.64□□□□□ -0.55
SHMT2-225ENST00000556798 PRR34Q9NV39 138 aa11.64□□□□□ -0.55
SHMT2-225ENST00000556798 A0A087WTM6 91 aa11.63□□□□□ -0.55
SHMT2-225ENST00000556798 MT-ND6P03923 174 aa11.63□□□□□ -0.55
SHMT2-225ENST00000556798 YPEL4Q96NS1 127 aa11.63□□□□□ -0.55
SHMT2-225ENST00000556798 C1orf43Q9BWL3 253 aa11.63□□□□□ -0.55
SHMT2-225ENST00000556798 PKHD1P08F94 4074 aa11.62□□□□□ -0.55
SHMT2-225ENST00000556798 IGKV3OR2-268A0A0C4DH90 116 aa11.62□□□□□ -0.55
SHMT2-225ENST00000556798 FABP9Q0Z7S8 132 aa11.62□□□□□ -0.55
SHMT2-225ENST00000556798 MIAQ16674 131 aa11.62□□□□□ -0.55
SHMT2-225ENST00000556798 MAPKAPK5-AS1Q8N8E1 139 aa11.62□□□□□ -0.55
SHMT2-225ENST00000556798 IGLV10-54A0A075B6I4 117 aa11.61□□□□□ -0.55
SHMT2-225ENST00000556798 PRSS47A8MTI9 375 aa11.61□□□□□ -0.55
SHMT2-225ENST00000556798 ZNF25P17030 456 aaPredicted RBP11.61□□□□□ -0.55
SHMT2-225ENST00000556798 RPL39P62891 51 aaKnown RBP11.61□□□□□ -0.55
SHMT2-225ENST00000556798 Q8N8P6 123 aa11.61□□□□□ -0.55
SHMT2-225ENST00000556798 OR5A1Q8NGJ0 315 aa11.61□□□□□ -0.55
SHMT2-225ENST00000556798 TMEM101Q96IK0 257 aa11.61□□□□□ -0.55
SHMT2-225ENST00000556798 SMCO4Q9NRQ5 59 aa11.61□□□□□ -0.55
SHMT2-225ENST00000556798 TRAPPC1Q9Y5R8 145 aa11.61□□□□□ -0.55
SHMT2-225ENST00000556798 LRCOL1A6NCL2 159 aa11.6□□□□□ -0.55
SHMT2-225ENST00000556798 LECT2O14960 151 aa11.6□□□□□ -0.55
SHMT2-225ENST00000556798 RAB5AP20339 215 aa11.6□□□□□ -0.55
SHMT2-225ENST00000556798 FUSP35637 526 aaKnown RBP eCLIP11.6□□□□□ -0.55
SHMT2-225ENST00000556798 WFDC2Q14508 124 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms