RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 Q8N3U1 123 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 Q8N976 141 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 NEXN-AS1Q8NBZ9 246 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 ABCA13Q86UQ4 5058 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 TRBV25-1A0A075B6N4 114 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 MGPP08493 103 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 DNAJC30Q96LL9 226 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 TMEM70Q9BUB7 260 aa4.88□□□□□ -1.63
SCFD1-222ENST00000556768 ANGP03950 147 aaKnown RBP4.87□□□□□ -1.63
SCFD1-222ENST00000556768 GZMBP10144 247 aa4.87□□□□□ -1.63
SCFD1-222ENST00000556768 NTF3P20783 257 aa4.87□□□□□ -1.63
SCFD1-222ENST00000556768 KRTAP10-1P60331 282 aa4.87□□□□□ -1.63
SCFD1-222ENST00000556768 TWIST1Q15672 202 aa4.87□□□□□ -1.63
SCFD1-222ENST00000556768 C14orf177Q52M58 125 aa4.87□□□□□ -1.63
SCFD1-222ENST00000556768 C9orf62Q8N4C0 152 aa4.87□□□□□ -1.63
SCFD1-222ENST00000556768 KRTAP4-12Q9BQ66 201 aa4.87□□□□□ -1.63
SCFD1-222ENST00000556768 C19orf71A6NCJ1 209 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 TMEM250H0YL14 139 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 LECT2O14960 151 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 IGLV2-8P01709 118 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 IGLC6P0CF74 106 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 GAGE2BQ13066 116 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 GAGE2EQ4V326 116 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 GAGE2AQ6NT46 116 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 LYZL1Q6UWQ5 148 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 ALKAL2Q6UX46 152 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 C15orf54Q8N8G6 183 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 BAALCQ8WXS3 180 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 KRTAP4-5Q9BYR2 181 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 EIF5A2Q9GZV4 153 aaKnown RBP4.86□□□□□ -1.63
SCFD1-222ENST00000556768 GAGE2DQ9UEU5 116 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 SRRM2Q9UQ35 2752 aaKnown RBP4.86□□□□□ -1.63
SCFD1-222ENST00000556768 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.86□□□□□ -1.63
SCFD1-222ENST00000556768 IGHV1-24A0A0C4DH33 117 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 M0QY20 66 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 CEBPGP53567 150 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 XGP55808 180 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 MIAQ16674 131 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 RASL11AQ6T310 242 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 KRTAP3-1Q9BYR8 98 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 DPH3P1Q9H4G8 78 aa4.86□□□□□ -1.63
SCFD1-222ENST00000556768 RPP21Q9H633 154 aaKnown RBP4.86□□□□□ -1.63
SCFD1-222ENST00000556768 TRBV20OR9-2A0A075B6H5 130 aa4.85□□□□□ -1.63
SCFD1-222ENST00000556768 UBE2L6O14933 153 aa4.85□□□□□ -1.63
SCFD1-222ENST00000556768 SUMO4Q6EEV6 95 aa4.85□□□□□ -1.63
SCFD1-222ENST00000556768 TEX261Q6UWH6 196 aa4.85□□□□□ -1.63
SCFD1-222ENST00000556768 BORCS7Q96B45 105 aa4.85□□□□□ -1.63
SCFD1-222ENST00000556768 NIT2Q9NQR4 276 aa4.85□□□□□ -1.63
SCFD1-222ENST00000556768 KIF25-AS1Q9Y6Z4 181 aa4.85□□□□□ -1.63
SCFD1-222ENST00000556768 A8MWL6 223 aa4.84□□□□□ -1.63
SCFD1-222ENST00000556768 NKX2-5P52952 324 aaPredicted RBP4.84□□□□□ -1.63
SCFD1-222ENST00000556768 MPV17L2Q567V2 206 aa4.84□□□□□ -1.63
SCFD1-222ENST00000556768 RNASE7Q9H1E1 156 aaKnown RBP4.84□□□□□ -1.63
SCFD1-222ENST00000556768 GATCO43716 136 aaKnown RBP4.83□□□□□ -1.64
SCFD1-222ENST00000556768 SMR3BP02814 79 aaPredicted RBP4.83□□□□□ -1.64
SCFD1-222ENST00000556768 GAGE6Q13070 117 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 COTL1Q14019 142 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 IQCJQ1A5X6 159 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 Q5VSD8 79 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 ATRAIDQ6UW56 229 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 TMEM243Q9BU79 118 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 FAT1Q14517 4588 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 HLA-DQA1P01909 254 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 INAFM2P0DMQ5 153 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 CTRLP40313 264 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 RBX1P62877 108 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 ENHOQ6UWT2 76 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 LINC00269Q8N2A0 174 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 PGLYRP4Q96LB8 373 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 SMIM7Q9BQ49 75 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 CNFNQ9BYD5 112 aa4.83□□□□□ -1.64
SCFD1-222ENST00000556768 TRAV8-4A0A0B4J246 113 aa4.82□□□□□ -1.64
SCFD1-222ENST00000556768 K7EN84 100 aa4.82□□□□□ -1.64
SCFD1-222ENST00000556768 WFDC2Q14508 124 aa4.82□□□□□ -1.64
SCFD1-222ENST00000556768 NTM-AS1Q6ZSK4 140 aa4.82□□□□□ -1.64
SCFD1-222ENST00000556768 LYPD6BQ8NI32 183 aa4.82□□□□□ -1.64
SCFD1-222ENST00000556768 A0A1B0GUV1 79 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 ZNF727A8MUV8 499 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 NDUFS6O75380 124 aaKnown RBP4.81□□□□□ -1.64
SCFD1-222ENST00000556768 AMTP48728 403 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 REG3AQ06141 175 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 PNRC1Q12796 327 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-222ENST00000556768 FAM231DQ6ZW35 169 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 PRR34Q9NV39 138 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 AMMECR1LQ6DCA0 310 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 CLPSL2Q6UWE3 100 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 FAM210AQ96ND0 272 aa4.81□□□□□ -1.64
SCFD1-222ENST00000556768 A0A1B0GUT8 65 aa4.8□□□□□ -1.64
SCFD1-222ENST00000556768 FAM231BA6NCW3 169 aa4.8□□□□□ -1.64
SCFD1-222ENST00000556768 FOXA3P55318 350 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-222ENST00000556768 HAMPP81172 84 aa4.8□□□□□ -1.64
SCFD1-222ENST00000556768 FAM74A3Q4VXF1 159 aa4.8□□□□□ -1.64
SCFD1-222ENST00000556768 GATD1Q8NB37 220 aa4.8□□□□□ -1.64
SCFD1-222ENST00000556768 GTSF1Q8WW33 167 aa4.8□□□□□ -1.64
SCFD1-222ENST00000556768 GFRA4Q9GZZ7 299 aa4.8□□□□□ -1.64
SCFD1-222ENST00000556768 IGLV10-54A0A075B6I4 117 aa4.79□□□□□ -1.64
SCFD1-222ENST00000556768 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-222ENST00000556768 TRAV26-2A0A0B4J265 109 aa4.79□□□□□ -1.64
SCFD1-222ENST00000556768 HIGD1CA8MV81 97 aa4.79□□□□□ -1.64
SCFD1-222ENST00000556768 NCR2O95944 276 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms