RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 IGLV5-45A0A087WSX0 123 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 GRIFINA4D1Z8 144 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 M0R381 172 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 RAB4BP61018 213 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 PKIAP61925 76 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 GAGE6Q13070 117 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 TWIST1Q15672 202 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 KCNIP4Q6PIL6 250 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 ENHOQ6UWT2 76 aa6.45□□□□□ -1.38
SCFD1-220ENST00000556486 MAP1LC3B2A6NCE7 125 aa6.44□□□□□ -1.38
SCFD1-220ENST00000556486 UBE2G1P62253 170 aa6.44□□□□□ -1.38
SCFD1-220ENST00000556486 AKR1C8PQ5T2L2 129 aa6.44□□□□□ -1.38
SCFD1-220ENST00000556486 MAP1LC3BQ9GZQ8 125 aa6.44□□□□□ -1.38
SCFD1-220ENST00000556486 PRR34Q9NV39 138 aa6.44□□□□□ -1.38
SCFD1-220ENST00000556486 VAX2Q9UIW0 290 aa6.44□□□□□ -1.38
SCFD1-220ENST00000556486 G3V3Q6 166 aa6.43□□□□□ -1.38
SCFD1-220ENST00000556486 SNAI2O43623 268 aa6.43□□□□□ -1.38
SCFD1-220ENST00000556486 S100A9P06702 114 aaKnown RBP6.43□□□□□ -1.38
SCFD1-220ENST00000556486 OR5AL1P0C617 328 aa6.43□□□□□ -1.38
SCFD1-220ENST00000556486 MIAQ16674 131 aa6.43□□□□□ -1.38
SCFD1-220ENST00000556486 MPV17L2Q567V2 206 aa6.43□□□□□ -1.38
SCFD1-220ENST00000556486 TMEM97Q5BJF2 176 aa6.43□□□□□ -1.38
SCFD1-220ENST00000556486 FXYD6-FXYD2A0A087WZ82 144 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 GAS8-AS1O95177 125 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 CRPP02741 224 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 KRTAP26-1Q6PEX3 210 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 ERASQ7Z444 233 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 C9orf163Q8N9P6 203 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 OR10AG1Q8NH19 301 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 STOML3Q8TAV4 291 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 CYTL1Q9NRR1 136 aa6.42□□□□□ -1.38
SCFD1-220ENST00000556486 TMSB15BA0A087X1C1 80 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 IGLV9-49A0A0B4J1Y8 123 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 TMEM262E9PQX1 116 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 AKR1C3P42330 323 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 NTM-AS1Q6ZSK4 140 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 C15orf54Q8N8G6 183 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-220ENST00000556486 ZNF471Q9BX82 626 aaPredicted RBP6.41□□□□□ -1.38
SCFD1-220ENST00000556486 BATF3Q9NR55 127 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 KIF25-AS1Q9Y6Z4 181 aa6.41□□□□□ -1.38
SCFD1-220ENST00000556486 PANO1I0J062 215 aa6.4□□□□□ -1.38
SCFD1-220ENST00000556486 ANGP03950 147 aaKnown RBP6.4□□□□□ -1.38
SCFD1-220ENST00000556486 PRSS1P07477 247 aa6.4□□□□□ -1.38
SCFD1-220ENST00000556486 RPL19P84098 196 aaKnown RBP6.4□□□□□ -1.38
SCFD1-220ENST00000556486 CIRBPQ14011 172 aaKnown RBP6.4□□□□□ -1.38
SCFD1-220ENST00000556486 MBD3L1Q8WWY6 194 aa6.4□□□□□ -1.38
SCFD1-220ENST00000556486 UMAD1C9J7I0 102 aa6.39□□□□□ -1.39
SCFD1-220ENST00000556486 CNBPP62633 177 aaKnown RBP6.39□□□□□ -1.39
SCFD1-220ENST00000556486 ZNF345Q14585 488 aa6.39□□□□□ -1.39
SCFD1-220ENST00000556486 ZNF56Q15929 161 aa6.39□□□□□ -1.39
SCFD1-220ENST00000556486 IQCJQ1A5X6 159 aa6.39□□□□□ -1.39
SCFD1-220ENST00000556486 KRTAP15-1Q3LI76 137 aa6.39□□□□□ -1.39
SCFD1-220ENST00000556486 SDIM1Q6ZPB5 146 aa6.39□□□□□ -1.39
SCFD1-220ENST00000556486 CHCHD5Q9BSY4 110 aa6.39□□□□□ -1.39
SCFD1-220ENST00000556486 ARPC5O15511 151 aa6.38□□□□□ -1.39
SCFD1-220ENST00000556486 SLPIP03973 132 aa6.38□□□□□ -1.39
SCFD1-220ENST00000556486 RBX1P62877 108 aa6.38□□□□□ -1.39
SCFD1-220ENST00000556486 BAGE2Q86Y30 109 aa6.38□□□□□ -1.39
SCFD1-220ENST00000556486 AP1S3Q96PC3 154 aa6.38□□□□□ -1.39
SCFD1-220ENST00000556486 LPAP08519 4548 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 TRBV25-1A0A075B6N4 114 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 A0A1B0GUV1 79 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 M0QY20 66 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 HLA-DQA1P01909 254 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 SPANXN1Q5VSR9 72 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 LINC00269Q8N2A0 174 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 KCNRGQ8N5I3 272 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 SFT2D1Q8WV19 159 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 DERL1Q9BUN8 251 aa6.37□□□□□ -1.39
SCFD1-220ENST00000556486 TRAV8-4A0A0B4J246 113 aa6.36□□□□□ -1.39
SCFD1-220ENST00000556486 PFDN1O60925 122 aa6.36□□□□□ -1.39
SCFD1-220ENST00000556486 P01737 135 aa6.36□□□□□ -1.39
SCFD1-220ENST00000556486 IGLC6P0CF74 106 aa6.36□□□□□ -1.39
SCFD1-220ENST00000556486 Q6ZRU5 148 aa6.36□□□□□ -1.39
SCFD1-220ENST00000556486 C11orf52Q96A22 123 aa6.36□□□□□ -1.39
SCFD1-220ENST00000556486 RNF185Q96GF1 192 aa6.36□□□□□ -1.39
SCFD1-220ENST00000556486 IGHV1-24A0A0C4DH33 117 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 H7C1H1 209 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 SMIM17P0DL12 118 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 GZMBP10144 247 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 REG3AQ06141 175 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 TMUB2Q71RG4 321 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 C20orf203Q8NBC4 194 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 SMIM12Q96EX1 92 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 PGLYRP4Q96LB8 373 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 DPH3P1Q9H4G8 78 aa6.35□□□□□ -1.39
SCFD1-220ENST00000556486 A0A0D9SG52 128 aa6.34□□□□□ -1.39
SCFD1-220ENST00000556486 HMSDA8MTL9 139 aa6.34□□□□□ -1.39
SCFD1-220ENST00000556486 RPL35P42766 123 aaKnown RBP6.34□□□□□ -1.39
SCFD1-220ENST00000556486 FAM213BQ8TBF2 198 aa6.34□□□□□ -1.39
SCFD1-220ENST00000556486 TRAV1-1A0A0B4J248 108 aa6.33□□□□□ -1.4
SCFD1-220ENST00000556486 MUC21A0A0G2JKD1 596 aa6.33□□□□□ -1.4
SCFD1-220ENST00000556486 MUC21A0A140T8X8 626 aa6.33□□□□□ -1.4
SCFD1-220ENST00000556486 C19orf71A6NCJ1 209 aa6.33□□□□□ -1.4
SCFD1-220ENST00000556486 TSHBP01222 138 aa6.33□□□□□ -1.4
SCFD1-220ENST00000556486 RPS20P60866 119 aaKnown RBP6.33□□□□□ -1.4
SCFD1-220ENST00000556486 CACNG7P62955 275 aa6.33□□□□□ -1.4
SCFD1-220ENST00000556486 SRSF9Q13242 221 aaKnown RBP eCLIP6.33□□□□□ -1.4
SCFD1-220ENST00000556486 CLPSL2Q6UWE3 100 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms