RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 NMBP08949 121 aa0.79□□□□□ -2.28
SCFD1-209ENST00000553280 KRTAP2-3P0C7H8 128 aa0.79□□□□□ -2.28
SCFD1-209ENST00000553280 C9orf153Q5TBE3 101 aa0.79□□□□□ -2.28
SCFD1-209ENST00000553280 SMR3AQ99954 134 aa0.79□□□□□ -2.28
SCFD1-209ENST00000553280 KRTAP2-4Q9BYR9 128 aa0.79□□□□□ -2.28
SCFD1-209ENST00000553280 KRTAP2-1Q9BYU5 128 aa0.79□□□□□ -2.28
SCFD1-209ENST00000553280 CYP4F30PQ9H0H9 118 aa0.79□□□□□ -2.28
SCFD1-209ENST00000553280 G3V318 75 aa0.78□□□□□ -2.28
SCFD1-209ENST00000553280 SSSCA1O60232 199 aa0.78□□□□□ -2.28
SCFD1-209ENST00000553280 COMMD6Q7Z4G1 85 aa0.78□□□□□ -2.28
SCFD1-209ENST00000553280 GNG8Q9UK08 70 aa0.78□□□□□ -2.28
SCFD1-209ENST00000553280 IER3IP1Q9Y5U9 82 aa0.78□□□□□ -2.28
SCFD1-209ENST00000553280 FAM135AQ9P2D6 1515 aa0.78□□□□□ -2.28
SCFD1-209ENST00000553280 R4GMQ9 66 aa0.77□□□□□ -2.29
SCFD1-209ENST00000553280 IFT172Q9UG01 1749 aa0.77□□□□□ -2.29
SCFD1-209ENST00000553280 PATJQ8NI35 1801 aa0.76□□□□□ -2.29
SCFD1-209ENST00000553280 PRDM2Q13029 1718 aa0.76□□□□□ -2.29
SCFD1-209ENST00000553280 PPP3R1P63098 170 aa0.75□□□□□ -2.29
SCFD1-209ENST00000553280 SHROOM2Q13796 1616 aa0.75□□□□□ -2.29
SCFD1-209ENST00000553280 FRAS1Q86XX4 4008 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 BDP1A6H8Y1 2624 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 MRPS10P82664 201 aaKnown RBP0.74□□□□□ -2.29
SCFD1-209ENST00000553280 CFAP126Q5VTH2 177 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 NDUFA4L2Q9NRX3 87 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 V9GYH0 126 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 ROBO1Q9Y6N7 1651 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 APCP25054 2843 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 CACNA1HO95180 2353 aa0.74□□□□□ -2.29
SCFD1-209ENST00000553280 DOCK1Q14185 1865 aa0.73□□□□□ -2.29
SCFD1-209ENST00000553280 TRBV7-3A0A075B6L6 115 aa0.73□□□□□ -2.29
SCFD1-209ENST00000553280 S100A1P23297 94 aa0.73□□□□□ -2.29
SCFD1-209ENST00000553280 SPAG11BQ08648 103 aa0.73□□□□□ -2.29
SCFD1-209ENST00000553280 SPAG11AQ6PDA7 123 aa0.73□□□□□ -2.29
SCFD1-209ENST00000553280 MGST2Q99735 147 aa0.73□□□□□ -2.29
SCFD1-209ENST00000553280 TENM3Q9P273 2699 aa0.73□□□□□ -2.29
SCFD1-209ENST00000553280 TTC28Q96AY4 2481 aa0.72□□□□□ -2.29
SCFD1-209ENST00000553280 UBE2L5PA0A1B0GUS4 154 aa0.72□□□□□ -2.29
SCFD1-209ENST00000553280 M0R135 149 aa0.72□□□□□ -2.29
SCFD1-209ENST00000553280 PIN1P1O15428 100 aa0.72□□□□□ -2.29
SCFD1-209ENST00000553280 UBE2L3P68036 154 aaKnown RBP0.72□□□□□ -2.29
SCFD1-209ENST00000553280 COX6A2Q02221 97 aa0.72□□□□□ -2.29
SCFD1-209ENST00000553280 TSLPQ969D9 159 aa0.72□□□□□ -2.29
SCFD1-209ENST00000553280 PZPP20742 1482 aa0.72□□□□□ -2.29
SCFD1-209ENST00000553280 ATP5EP56381 51 aaPredicted RBP0.71□□□□□ -2.3
SCFD1-209ENST00000553280 SPINK6Q6UWN8 80 aa0.71□□□□□ -2.3
SCFD1-209ENST00000553280 UBE2DNLQ8IWF7 75 aa0.71□□□□□ -2.3
SCFD1-209ENST00000553280 ZNF609O15014 1411 aa0.71□□□□□ -2.3
SCFD1-209ENST00000553280 CADP27708 2225 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 FAM24AA6NFZ4 105 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 WHAMMP3Q1A5X7 153 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 SVBPQ8N300 66 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 MYOZ3Q8TDC0 251 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 AMELXQ99217 191 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 DYNLRB1Q9NP97 96 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 LINC00474Q9P2X8 69 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 MYO7AQ13402 2215 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 C10orf71Q711Q0 1435 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 NRKQ7Z2Y5 1582 aa0.7□□□□□ -2.3
SCFD1-209ENST00000553280 MAPKBP1O60336 1514 aa0.69□□□□□ -2.3
SCFD1-209ENST00000553280 RIMS1Q86UR5 1692 aaKnown RBP0.69□□□□□ -2.3
SCFD1-209ENST00000553280 CTXND1A0A1B0GTU2 59 aa0.69□□□□□ -2.3
SCFD1-209ENST00000553280 KRTAP21-1Q3LI58 79 aa0.69□□□□□ -2.3
SCFD1-209ENST00000553280 DPH3P1Q9H4G8 78 aa0.69□□□□□ -2.3
SCFD1-209ENST00000553280 DOCK11Q5JSL3 2073 aa0.68□□□□□ -2.3
SCFD1-209ENST00000553280 SMIM4Q8WVI0 70 aa0.68□□□□□ -2.3
SCFD1-209ENST00000553280 PIEZO1Q92508 2521 aa0.68□□□□□ -2.3
SCFD1-209ENST00000553280 CACNA1EQ15878 2313 aa0.67□□□□□ -2.3
SCFD1-209ENST00000553280 ZNF815PA8K554 130 aa0.66□□□□□ -2.3
SCFD1-209ENST00000553280 HMGN4O00479 90 aa0.66□□□□□ -2.3
SCFD1-209ENST00000553280 IFITM1P13164 125 aa0.66□□□□□ -2.3
SCFD1-209ENST00000553280 SSBP3-AS1Q7Z2R9 100 aa0.66□□□□□ -2.3
SCFD1-209ENST00000553280 NPVFQ9HCQ7 196 aa0.66□□□□□ -2.3
SCFD1-209ENST00000553280 DOCK2Q92608 1830 aa0.66□□□□□ -2.3
SCFD1-209ENST00000553280 DCDP81605 110 aaKnown RBP0.65□□□□□ -2.31
SCFD1-209ENST00000553280 COX17Q14061 63 aa0.65□□□□□ -2.31
SCFD1-209ENST00000553280 MYH8P13535 1937 aa0.65□□□□□ -2.31
SCFD1-209ENST00000553280 SCAPERQ9BY12 1400 aa0.64□□□□□ -2.31
SCFD1-209ENST00000553280 LOC285095A0A1B0GVY8 99 aa0.64□□□□□ -2.31
SCFD1-209ENST00000553280 F8VRH5 84 aa0.64□□□□□ -2.31
SCFD1-209ENST00000553280 UQCR11O14957 56 aa0.64□□□□□ -2.31
SCFD1-209ENST00000553280 S100PP25815 95 aa0.64□□□□□ -2.31
SCFD1-209ENST00000553280 GTF2H5Q6ZYL4 71 aa0.64□□□□□ -2.31
SCFD1-209ENST00000553280 POLQO75417 2590 aa0.63□□□□□ -2.31
SCFD1-209ENST00000553280 MYOM1P52179 1685 aa0.63□□□□□ -2.31
SCFD1-209ENST00000553280 C20orf202A1L168 122 aa0.63□□□□□ -2.31
SCFD1-209ENST00000553280 PI4KAP42356 2102 aa0.63□□□□□ -2.31
SCFD1-209ENST00000553280 BAGE2Q86Y30 109 aa0.63□□□□□ -2.31
SCFD1-209ENST00000553280 ABCA12Q86UK0 2595 aa0.62□□□□□ -2.31
SCFD1-209ENST00000553280 LRRC37A2A6NM11 1700 aa0.62□□□□□ -2.31
SCFD1-209ENST00000553280 IGLC7A0M8Q6 106 aa0.62□□□□□ -2.31
SCFD1-209ENST00000553280 SPINK8P0C7L1 97 aa0.62□□□□□ -2.31
SCFD1-209ENST00000553280 ARHGAP5Q13017 1502 aa0.62□□□□□ -2.31
SCFD1-209ENST00000553280 APOC3P02656 99 aa0.61□□□□□ -2.31
SCFD1-209ENST00000553280 GNG11P61952 73 aa0.61□□□□□ -2.31
SCFD1-209ENST00000553280 CGREF1Q99674 301 aa0.61□□□□□ -2.31
SCFD1-209ENST00000553280 LINC01558Q9Y6Z2 57 aa0.61□□□□□ -2.31
SCFD1-209ENST00000553280 KIF21AQ7Z4S6 1674 aa0.61□□□□□ -2.31
SCFD1-209ENST00000553280 TPRP12270 2363 aaKnown RBP0.61□□□□□ -2.31
SCFD1-209ENST00000553280 TNCP24821 2201 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 AHNAKQ09666 5890 aaKnown RBP0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms