RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 LINC01549A6NIU2 74 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 H7C423 109 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 LINC00614P0C842 121 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 PMCHP20382 165 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 RAB5BP61020 215 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 IQCJQ1A5X6 159 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 LYPD5Q6UWN5 251 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 NTM-AS1Q6ZSK4 140 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 CHCHD1Q96BP2 118 aaKnown RBP6.61□□□□□ -1.35
LIMA1-211ENST00000552338 KIR2DL4Q99706 377 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 CSMD3Q7Z407 3707 aa6.61□□□□□ -1.35
LIMA1-211ENST00000552338 TRBV6-8A0A0A6YYG3 113 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 IGLL5B9A064 214 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 TSHBP01222 138 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 G0S2P27469 103 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 IFI27P40305 119 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-211ENST00000552338 COTL1Q14019 142 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 LELP1Q5T871 98 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 NIT1Q86X76 327 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 UPK3BQ9BT76 320 aa6.6□□□□□ -1.35
LIMA1-211ENST00000552338 NPSP0C0P6 89 aa6.59□□□□□ -1.35
LIMA1-211ENST00000552338 LINC00310P59036 64 aa6.59□□□□□ -1.35
LIMA1-211ENST00000552338 ESRGQ1W209 222 aa6.59□□□□□ -1.35
LIMA1-211ENST00000552338 ORMDL2Q53FV1 153 aa6.59□□□□□ -1.35
LIMA1-211ENST00000552338 PRSS3P2Q8NHM4 247 aa6.59□□□□□ -1.35
LIMA1-211ENST00000552338 CHCHD7Q9BUK0 85 aa6.59□□□□□ -1.35
LIMA1-211ENST00000552338 AP5S1Q9NUS5 200 aa6.59□□□□□ -1.35
LIMA1-211ENST00000552338 CSDC2Q9Y534 153 aaKnown RBP6.59□□□□□ -1.35
LIMA1-211ENST00000552338 A0A1B0GUV1 79 aa6.58□□□□□ -1.36
LIMA1-211ENST00000552338 LAGE3Q14657 143 aa6.58□□□□□ -1.36
LIMA1-211ENST00000552338 CASC10Q5T4H9 136 aa6.58□□□□□ -1.36
LIMA1-211ENST00000552338 C20orf203Q8NBC4 194 aa6.58□□□□□ -1.36
LIMA1-211ENST00000552338 PACRGQ96M98 296 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-211ENST00000552338 TIMM21Q9BVV7 248 aa6.58□□□□□ -1.36
LIMA1-211ENST00000552338 TRBV25-1A0A075B6N4 114 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 A0A096LNJ9 63 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 IGHV1-24A0A0C4DH33 117 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 LOC389332A0A1B0GUA5 103 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 NUDT3O95989 172 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 FCER1GP30273 86 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 FA2HQ7L5A8 372 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 MRPL52Q86TS9 123 aaKnown RBP6.57□□□□□ -1.36
LIMA1-211ENST00000552338 MRPS16Q9Y3D3 137 aaKnown RBP6.57□□□□□ -1.36
LIMA1-211ENST00000552338 PYGO1Q9Y3Y4 419 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 STARD9Q9P2P6 4700 aa6.57□□□□□ -1.36
LIMA1-211ENST00000552338 IGHV3-38A0A0C4DH36 116 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 K7EP13 123 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 CCL18P55774 89 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 PKIAP61925 76 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 BAGE3Q86Y29 109 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 TMEM18Q96B42 140 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 TOMM6Q96B49 74 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 LINC00588Q9Y4M8 146 aa6.56□□□□□ -1.36
LIMA1-211ENST00000552338 NUPR1O60356 82 aa6.55□□□□□ -1.36
LIMA1-211ENST00000552338 SERF1AO75920 110 aa6.55□□□□□ -1.36
LIMA1-211ENST00000552338 ZNF25P17030 456 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-211ENST00000552338 AMTP48728 403 aa6.55□□□□□ -1.36
LIMA1-211ENST00000552338 LGALS9CQ6DKI2 356 aa6.55□□□□□ -1.36
LIMA1-211ENST00000552338 TMEM243Q9BU79 118 aa6.55□□□□□ -1.36
LIMA1-211ENST00000552338 TGP01266 2768 aa6.55□□□□□ -1.36
LIMA1-211ENST00000552338 TRAV8-6A0A0B4J262 113 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 C5orf52A6NGY3 159 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 IGIPA6NJ69 53 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 DNAH10OSP0CZ25 163 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 SMAGPQ0VAQ4 97 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 PDZD11Q5EBL8 140 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 C2orf66Q6UXQ4 117 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 TIMM17AQ99595 171 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 UBE2D4Q9Y2X8 147 aa6.54□□□□□ -1.36
LIMA1-211ENST00000552338 PLECQ15149 4684 aaKnown RBP6.53□□□□□ -1.36
LIMA1-211ENST00000552338 HSBP1O75506 76 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 HBDP02042 147 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 NDUFA6P56556 154 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 MRPS36P82909 103 aaKnown RBP6.53□□□□□ -1.36
LIMA1-211ENST00000552338 LINC01556Q5JQF7 62 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 ERASQ7Z444 233 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 FAM104AQ969W3 186 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 SPANXA1Q9NS26 97 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 CYSLTR1Q9Y271 337 aa6.53□□□□□ -1.36
LIMA1-211ENST00000552338 ZFAND6Q6FIF0 208 aa6.52□□□□□ -1.37
LIMA1-211ENST00000552338 RNASEKQ6P5S7 137 aaKnown RBP6.52□□□□□ -1.37
LIMA1-211ENST00000552338 SIVA1O15304 175 aa6.51□□□□□ -1.37
LIMA1-211ENST00000552338 FGF6P10767 208 aa6.51□□□□□ -1.37
LIMA1-211ENST00000552338 BTF3P20290 206 aaKnown RBP6.51□□□□□ -1.37
LIMA1-211ENST00000552338 RPL39P62891 51 aaKnown RBP6.51□□□□□ -1.37
LIMA1-211ENST00000552338 TMEM141Q96I45 108 aa6.51□□□□□ -1.37
LIMA1-211ENST00000552338 AMELXQ99217 191 aa6.51□□□□□ -1.37
LIMA1-211ENST00000552338 Q9H8V8 135 aa6.51□□□□□ -1.37
LIMA1-211ENST00000552338 CDC42SE2Q9NRR3 84 aa6.51□□□□□ -1.37
LIMA1-211ENST00000552338 PRR34Q9NV39 138 aa6.51□□□□□ -1.37
LIMA1-211ENST00000552338 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-211ENST00000552338 IGKV2-29A2NJV5 120 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-211ENST00000552338 UBE2L6O14933 153 aa6.5□□□□□ -1.37
LIMA1-211ENST00000552338 ATP5LO75964 103 aa6.5□□□□□ -1.37
LIMA1-211ENST00000552338 S100A6P06703 90 aa6.5□□□□□ -1.37
LIMA1-211ENST00000552338 PAPPA-AS1Q5QFB9 102 aa6.5□□□□□ -1.37
LIMA1-211ENST00000552338 FAM19A3Q7Z5A8 133 aa6.5□□□□□ -1.37
LIMA1-211ENST00000552338 WFDC10BQ8IUB3 73 aa6.5□□□□□ -1.37
LIMA1-211ENST00000552338 HIST3H2BBQ8N257 126 aa6.5□□□□□ -1.37
LIMA1-211ENST00000552338 CHCHD5Q9BSY4 110 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms