RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 THADAQ6YHU6 1953 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 CABIN1Q9Y6J0 2220 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 NFAT5O94916 1531 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 ARHGEF5Q12774 1597 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 TIAM1Q13009 1591 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 PATJQ8NI35 1801 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 ADCY10Q96PN6 1610 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 PTPN23Q9H3S7 1636 aa1.33□□□□□ -2.2
LIMA1-207ENST00000551486 COL5A3P25940 1745 aaPredicted RBP1.32□□□□□ -2.2
LIMA1-207ENST00000551486 SUPT6HQ7KZ85 1726 aaKnown RBP1.32□□□□□ -2.2
LIMA1-207ENST00000551486 ARHGEF28Q8N1W1 1705 aaKnown RBP1.32□□□□□ -2.2
LIMA1-207ENST00000551486 SHANK3Q9BYB0 1731 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 KDM3BQ7LBC6 1761 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 HEATR5BQ9P2D3 2071 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 IGLV7-46A0A075B6I9 117 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 IGKV3D-11A0A0A0MRZ8 115 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 TRAV10A0A0B4J240 114 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 LOC101927531A0A1B0GV80 90 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 PCNX2A6NKB5 2137 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 H3BPC8 53 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 HMGN4O00479 90 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 IGLV1-47P01700 117 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 CD24P25063 80 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 TMEM105Q8N8V8 129 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 KLHL30-AS1Q8NEE0 82 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 TMEM263Q8WUH6 116 aaKnown RBP1.32□□□□□ -2.2
LIMA1-207ENST00000551486 LINC00167Q96N53 147 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 WFDC6Q9BQY6 131 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 TXNDC17Q9BRA2 123 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 PRR15LQ9BU68 103 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 NDUFA4L2Q9NRX3 87 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 CEP170BQ9Y4F5 1589 aaPredicted RBP1.32□□□□□ -2.2
LIMA1-207ENST00000551486 CLTCL1P53675 1640 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 TOP2BQ02880 1626 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 ABCA5Q8WWZ7 1642 aa1.32□□□□□ -2.2
LIMA1-207ENST00000551486 NINQ8N4C6 2090 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 NWD1Q149M9 1564 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 SETXQ7Z333 2677 aaKnown RBP1.31□□□□□ -2.2
LIMA1-207ENST00000551486 KIAA1549Q9HCM3 1950 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 MYO3AQ8NEV4 1616 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 IGLV11-55A0A075B6I3 123 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.31□□□□□ -2.2
LIMA1-207ENST00000551486 A0A087WSZ3 146 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 IGHV1-18A0A0C4DH31 117 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 A0A1W2PNM2 257 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 CLPSL1A2RUU4 121 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 GIG44P09565 113 aaPredicted RBP1.31□□□□□ -2.2
LIMA1-207ENST00000551486 Q8N377 158 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 LINC01560Q8TB33 94 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 TMEM254Q8TBM7 123 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 IMMP1LQ96LU5 166 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 DEFB126Q9BYW3 111 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 C14orf132Q9NPU4 83 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 LINC00846Q9NV44 126 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 C22orf24Q9Y442 160 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 SIPA1L3O60292 1781 aaPredicted RBP1.31□□□□□ -2.2
LIMA1-207ENST00000551486 PPLO60437 1756 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 SVILO95425 2214 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 ZFHX4Q86UP3 3567 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 CD163L1Q9NR16 1453 aa1.31□□□□□ -2.2
LIMA1-207ENST00000551486 TRPM2O94759 1503 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 GPATCH8Q9UKJ3 1502 aaKnown RBP1.3□□□□□ -2.2
LIMA1-207ENST00000551486 ARHGAP21Q5T5U3 1957 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 CASP8AP2Q9UKL3 1982 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 NESP48681 1621 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 SPTBP11277 2137 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 COL4A6Q14031 1691 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 SDK2Q58EX2 2172 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 IFT172Q9UG01 1749 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 NWD2Q9ULI1 1742 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 CRYBG1Q9Y4K1 1723 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 ARID1AO14497 2285 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 MAST2Q6P0Q8 1798 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 TRAV40A0A0B4J280 105 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 TRBV7-4A0A0J9YYF1 115 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 CTXND1A0A1B0GTU2 59 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 J3QRE1 110 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 PIN1P1O15428 100 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 PPP1R17O96001 155 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 IGHV3-30P01768 117 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 SAA2P0DJI9 122 aaPredicted RBP1.3□□□□□ -2.2
LIMA1-207ENST00000551486 IGHV3-30-5P0DP03 117 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 SPAG11BQ08648 103 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 LINC00483Q53H64 154 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 ATP5EP2Q5VTU8 51 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 SPAG11AQ6PDA7 123 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 ENHOQ6UWT2 76 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 C9orf163Q8N9P6 203 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 WFDC9Q8NEX5 89 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 ORMDL1Q9P0S3 153 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 SCN4AP35499 1836 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 OBSL1O75147 1896 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 DLG5Q8TDM6 1919 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 PLXNB3Q9ULL4 1909 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 CUL9Q8IWT3 2517 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 TET2Q6N021 2002 aaPredicted RBP1.3□□□□□ -2.2
LIMA1-207ENST00000551486 MRC1P22897 1456 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 MUC4Q99102 2169 aa1.3□□□□□ -2.2
LIMA1-207ENST00000551486 PEAK1Q9H792 1746 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 RP1L1Q8IWN7 2480 aaPredicted RBP1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms