RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 DPH3Q96FX2 82 aa10.59□□□□□ -0.71
RAPGEF3-216ENST00000547856 ZFHX3Q15911 3703 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 C9orf139Q6ZV77 190 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 CCL21O00585 134 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 TIRAPP58753 221 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 C5orf38Q86SI9 138 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 C20orf203Q8NBC4 194 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 ZNF625Q96I27 306 aaPredicted RBP10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 CITED2Q99967 270 aaPredicted RBP10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 SPANXDQ9BXN6 97 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 SPANXCQ9NY87 97 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 LENEPQ9Y5L5 61 aa10.58□□□□□ -0.72
RAPGEF3-216ENST00000547856 IGKV3D-7A0A0C4DH55 119 aa10.57□□□□□ -0.72
RAPGEF3-216ENST00000547856 F5H768 121 aa10.57□□□□□ -0.72
RAPGEF3-216ENST00000547856 WIPF1O43516 503 aa10.57□□□□□ -0.72
RAPGEF3-216ENST00000547856 COL6A6A6NMZ7 2263 aa10.57□□□□□ -0.72
RAPGEF3-216ENST00000547856 BAALC-AS2P0C853 105 aa10.57□□□□□ -0.72
RAPGEF3-216ENST00000547856 RPS28P62857 69 aaKnown RBP10.57□□□□□ -0.72
RAPGEF3-216ENST00000547856 ATP5G1P05496 136 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 FAM110DQ8TAY7 271 aaPredicted RBP10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 IGHV1-58A0A0C4DH39 117 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 MED14OSP0DP75 135 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 FBXL19-AS1Q494R0 122 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 UNQ9165/PRO28630Q6UXU0 137 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 Q8N2B8 174 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 Q8N9W7 124 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 PEMTQ9UBM1 199 aa10.56□□□□□ -0.72
RAPGEF3-216ENST00000547856 A0A087WVE0 104 aa10.55□□□□□ -0.72
RAPGEF3-216ENST00000547856 M0QY20 66 aa10.55□□□□□ -0.72
RAPGEF3-216ENST00000547856 Q9HAA7 133 aa10.55□□□□□ -0.72
RAPGEF3-216ENST00000547856 CHD8Q9HCK8 2581 aa10.55□□□□□ -0.72
RAPGEF3-216ENST00000547856 ATOX1O00244 68 aa10.54□□□□□ -0.72
RAPGEF3-216ENST00000547856 ADORA2A-AS1P86434 159 aa10.54□□□□□ -0.72
RAPGEF3-216ENST00000547856 IGHV3-73A0A0B4J1V6 119 aa10.54□□□□□ -0.72
RAPGEF3-216ENST00000547856 IGKV3-20P01619 116 aa10.54□□□□□ -0.72
RAPGEF3-216ENST00000547856 SPTBN1Q01082 2364 aaKnown RBP10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 NCOR2Q9Y618 2525 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 CXCL5P42830 114 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 VSIG2Q96IQ7 327 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 FAM19A4Q96LR4 140 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 U3KQE9 123 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 NACAE9PAV3 2078 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 COX7A2LO14548 114 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 HOXD3P31249 432 aaPredicted RBP10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 Q8N6K4 173 aa10.53□□□□□ -0.72
RAPGEF3-216ENST00000547856 TRBV12-3P01733 135 aa10.52□□□□□ -0.72
RAPGEF3-216ENST00000547856 TRBV6-5A0A0K0K1A5 114 aa10.52□□□□□ -0.73
RAPGEF3-216ENST00000547856 ODF3BA8MYP8 253 aa10.52□□□□□ -0.73
RAPGEF3-216ENST00000547856 TRAV12-2A0A075B6T6 113 aa10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 KLK9Q9UKQ9 250 aa10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 LY6G5BQ8NDX9 201 aa10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 C10orf105Q8TEF2 133 aa10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 FAM218AQ96MZ4 157 aa10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 ITPR1Q14643 2758 aa10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 MRPS36P82909 103 aaKnown RBP10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 RPL18AQ02543 176 aaKnown RBP10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 C22orf24Q9Y442 160 aa10.51□□□□□ -0.73
RAPGEF3-216ENST00000547856 FAM104AQ969W3 186 aa10.5□□□□□ -0.73
RAPGEF3-216ENST00000547856 IGHV3OR16-10A0A075B7F0 116 aa10.5□□□□□ -0.73
RAPGEF3-216ENST00000547856 TMEM258P61165 79 aa10.5□□□□□ -0.73
RAPGEF3-216ENST00000547856 Q5XG85 94 aa10.5□□□□□ -0.73
RAPGEF3-216ENST00000547856 HIVEP3Q5T1R4 2406 aa10.49□□□□□ -0.73
RAPGEF3-216ENST00000547856 SOCS3O14543 225 aa10.49□□□□□ -0.73
RAPGEF3-216ENST00000547856 HIST1H4AP62805 103 aaKnown RBP10.49□□□□□ -0.73
RAPGEF3-216ENST00000547856 UCNP55089 124 aa10.49□□□□□ -0.73
RAPGEF3-216ENST00000547856 IGHV3-11P01762 117 aa10.48□□□□□ -0.73
RAPGEF3-216ENST00000547856 PROK1P58294 105 aa10.48□□□□□ -0.73
RAPGEF3-216ENST00000547856 LINC00308Q8TCZ7 52 aa10.48□□□□□ -0.73
RAPGEF3-216ENST00000547856 C9orf129Q5T035 196 aaKnown RBP10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 C11orf71Q6IPW1 123 aa10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 C14orf132Q9NPU4 83 aa10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 IGKV2-29A2NJV5 120 aaPredicted RBP10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 HTN1P15515 57 aa10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 BEAN1Q3B7T3 259 aa10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 CDKN2A-AS1Q9UH64 79 aa10.47□□□□□ -0.73
RAPGEF3-216ENST00000547856 DNAL4O96015 105 aa10.46□□□□□ -0.73
RAPGEF3-216ENST00000547856 EDN2P20800 178 aa10.46□□□□□ -0.73
RAPGEF3-216ENST00000547856 MINOS1Q5TGZ0 78 aa10.46□□□□□ -0.73
RAPGEF3-216ENST00000547856 SERP2Q8N6R1 65 aa10.46□□□□□ -0.73
RAPGEF3-216ENST00000547856 Q9UF83 564 aa10.46□□□□□ -0.73
RAPGEF3-216ENST00000547856 CIRBPQ14011 172 aaKnown RBP10.46□□□□□ -0.74
RAPGEF3-216ENST00000547856 UPK3BQ9BT76 320 aa10.46□□□□□ -0.74
RAPGEF3-216ENST00000547856 Q9H8V8 135 aa10.46□□□□□ -0.74
RAPGEF3-216ENST00000547856 IGHV3-16A0A0C4DH30 117 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 A0A1W2PPR1 153 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 INAFM2P0DMQ5 153 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 SYNJ2BPP57105 145 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 SOSTDC1Q6X4U4 206 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 APRG1Q8IVJ8 170 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 PYGO1Q9Y3Y4 419 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 KLLNB2CW77 178 aa10.45□□□□□ -0.74
RAPGEF3-216ENST00000547856 IGHG2P01859 326 aa10.44□□□□□ -0.74
RAPGEF3-216ENST00000547856 AKAP6Q13023 2319 aa10.44□□□□□ -0.74
RAPGEF3-216ENST00000547856 MALP21145 153 aa10.44□□□□□ -0.74
RAPGEF3-216ENST00000547856 PRIMA1Q86XR5 153 aa10.44□□□□□ -0.74
RAPGEF3-216ENST00000547856 TINCRA0A1B0GVN0 87 aa10.43□□□□□ -0.74
RAPGEF3-216ENST00000547856 USP17L23D6RBM5 183 aa10.43□□□□□ -0.74
RAPGEF3-216ENST00000547856 LINC00846Q9NV44 126 aa10.43□□□□□ -0.74
RAPGEF3-216ENST00000547856 LINC01561Q8N1V8 128 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms