RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-222	ENST00000543744	TMEM223	A0PJW6	202 aa		12.9	□□□□□ -0.34
PTPN6-222	ENST00000543744	RS1	O15537	224 aa		12.9	□□□□□ -0.34
PTPN6-222	ENST00000543744	IGHV3-53	P01767	116 aa		12.9	□□□□□ -0.34
PTPN6-222	ENST00000543744	LGALS3	P17931	250 aa	Known RBP	12.9	□□□□□ -0.34
PTPN6-222	ENST00000543744	IGHV3OR16-12	A0A075B7B8	117 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744		A0A0J9YXV3	536 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744		K7ERU9	68 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744	AZU1	P20160	251 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744	RRN3P1	Q2M238	152 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744	DNAJC30	Q96LL9	226 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744	C16orf95	Q9H693	158 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744	ZNF22	P17026	224 aa	Predicted RBP	12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744	C1orf158	Q8N1D5	194 aa		12.89	□□□□□ -0.35
PTPN6-222	ENST00000543744	PDZD2	O15018	2839 aa		12.88	□□□□□ -0.35
PTPN6-222	ENST00000543744		J3QKU1	62 aa		12.88	□□□□□ -0.35
PTPN6-222	ENST00000543744	LEPROT	O15243	131 aa		12.88	□□□□□ -0.35
PTPN6-222	ENST00000543744	PLA2G2A	P14555	144 aa		12.88	□□□□□ -0.35
PTPN6-222	ENST00000543744	CRYBA4	P53673	196 aa		12.88	□□□□□ -0.35
PTPN6-222	ENST00000543744	AMELX	Q99217	191 aa		12.88	□□□□□ -0.35
PTPN6-222	ENST00000543744	CEMP1	Q6PRD7	247 aa	Predicted RBP	12.87	□□□□□ -0.35
PTPN6-222	ENST00000543744	SLC25A29	Q8N8R3	303 aa		12.87	□□□□□ -0.35
PTPN6-222	ENST00000543744	SPANXB1	Q9NS25	103 aa	Predicted RBP	12.87	□□□□□ -0.35
PTPN6-222	ENST00000543744	NACA	E9PAV3	2078 aa		12.87	□□□□□ -0.35
PTPN6-222	ENST00000543744	FAM104A	Q969W3	186 aa		12.86	□□□□□ -0.35
PTPN6-222	ENST00000543744	CHCHD7	Q9BUK0	85 aa		12.86	□□□□□ -0.35
PTPN6-222	ENST00000543744	SAP30	O75446	220 aa		12.86	□□□□□ -0.35
PTPN6-222	ENST00000543744	SPANXA1	Q9NS26	97 aa		12.86	□□□□□ -0.35
PTPN6-222	ENST00000543744	WNK1	Q9H4A3	2382 aa		12.85	□□□□□ -0.35
PTPN6-222	ENST00000543744	UBE2D1	P51668	147 aa		12.85	□□□□□ -0.35
PTPN6-222	ENST00000543744	CMC4	P56277	68 aa	Predicted RBP	12.85	□□□□□ -0.35
PTPN6-222	ENST00000543744	CUBN	O60494	3623 aa		12.85	□□□□□ -0.35
PTPN6-222	ENST00000543744	IGHV3-64	A0A075B6Q5	118 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	TRGV1	A0A0A0MS02	117 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	IGHV3-38	A0A0C4DH36	116 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	COTL1	Q14019	142 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	PGPEP1	Q9NXJ5	209 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	MRPS36	P82909	103 aa	Known RBP	12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	IL17D	Q8TAD2	202 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	UBE2D4	Q9Y2X8	147 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	ACAN	P16112	2415 aa		12.84	□□□□□ -0.35
PTPN6-222	ENST00000543744	SETD2	Q9BYW2	2564 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	IGKV2-29	A2NJV5	120 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	IGHV3-30	P01768	117 aa		12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	IGHV3-30-5	P0DP03	117 aa		12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	ZNF418	Q8TF45	676 aa	Predicted RBP	12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	VPS25	Q9BRG1	176 aa		12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	RNASE13	Q5GAN3	156 aa	Known RBP	12.83	□□□□□ -0.36
PTPN6-222	ENST00000543744	APOM	O95445	188 aa		12.81	□□□□□ -0.36
PTPN6-222	ENST00000543744	TMEM263	Q8WUH6	116 aa	Known RBP	12.81	□□□□□ -0.36
PTPN6-222	ENST00000543744	ITPR2	Q14571	2701 aa		12.81	□□□□□ -0.36
PTPN6-222	ENST00000543744		H3BMG7	143 aa		12.81	□□□□□ -0.36
PTPN6-222	ENST00000543744	HILS1	P60008	231 aa		12.81	□□□□□ -0.36
PTPN6-222	ENST00000543744	TIMM21	Q9BVV7	248 aa		12.81	□□□□□ -0.36
PTPN6-222	ENST00000543744	MTOR	P42345	2549 aa		12.8	□□□□□ -0.36
PTPN6-222	ENST00000543744	TINCR	A0A1B0GVN0	87 aa		12.79	□□□□□ -0.36
PTPN6-222	ENST00000543744		F8W1H4	67 aa		12.79	□□□□□ -0.36
PTPN6-222	ENST00000543744	IGLV1-51	P01701	117 aa		12.79	□□□□□ -0.36
PTPN6-222	ENST00000543744	IGHV3-30-3	P0DP02	117 aa		12.79	□□□□□ -0.36
PTPN6-222	ENST00000543744	NDUFA11	Q86Y39	141 aa		12.79	□□□□□ -0.36
PTPN6-222	ENST00000543744		Q6ZTI0	123 aa		12.79	□□□□□ -0.36
PTPN6-222	ENST00000543744		Q6ZUT4	128 aa		12.79	□□□□□ -0.36
PTPN6-222	ENST00000543744	TSPAN13	O95857	204 aa		12.78	□□□□□ -0.36
PTPN6-222	ENST00000543744	HELZ2	Q9BYK8	2649 aa	Known RBP	12.78	□□□□□ -0.36
PTPN6-222	ENST00000543744	UNC79	Q9P2D8	2635 aa		12.78	□□□□□ -0.36
PTPN6-222	ENST00000543744		G3V4G9	280 aa		12.78	□□□□□ -0.36
PTPN6-222	ENST00000543744	FAM110A	Q9BQ89	295 aa		12.78	□□□□□ -0.36
PTPN6-222	ENST00000543744	ADARB2-AS1	A8MUL3	147 aa		12.77	□□□□□ -0.37
PTPN6-222	ENST00000543744	GIG44	P09565	113 aa	Predicted RBP	12.77	□□□□□ -0.37
PTPN6-222	ENST00000543744	CFC1B	P0CG36	223 aa		12.77	□□□□□ -0.37
PTPN6-222	ENST00000543744	CFC1	P0CG37	223 aa		12.77	□□□□□ -0.37
PTPN6-222	ENST00000543744	RPL24	P83731	157 aa	Known RBP	12.77	□□□□□ -0.37
PTPN6-222	ENST00000543744	C10orf126	Q8N4M7	172 aa		12.77	□□□□□ -0.37
PTPN6-222	ENST00000543744	WFDC10A	Q9H1F0	79 aa		12.77	□□□□□ -0.37
PTPN6-222	ENST00000543744	TRAV4	A0A0B4J268	109 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	IGHV1-58	A0A0C4DH39	117 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	TMEM238	C9JI98	176 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	NDUFA7	O95182	113 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	RPL36A	P83881	106 aa	Known RBP	12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	DGAT2L7P	Q6IED9	249 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	RPL36AL	Q969Q0	106 aa	Known RBP	12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	NOP10	Q9NPE3	64 aa	Known RBP	12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	TRAV8-3	A0A0A6YYJ7	113 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	TRBV10-1	A0A0K0K1A3	114 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744		K7EQD1	137 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	RPL35A	P18077	110 aa	Known RBP	12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	GAGE13	Q4V321	117 aa		12.76	□□□□□ -0.37
PTPN6-222	ENST00000543744	SETX	Q7Z333	2677 aa	Known RBP	12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	NIPBL	Q6KC79	2804 aa	eCLIP	12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	LOC107984156	A0A0G2JMH3	177 aa		12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744		A0A0J9YXY3	114 aa		12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	DAZ2	Q13117	558 aa	Known RBP	12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	WFDC2	Q14508	124 aa		12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	ARL17A	Q8IVW1	177 aa		12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	GEMIN7	Q9H840	131 aa	Known RBP	12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	C19orf73	Q9NVV2	129 aa		12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	ANK3	Q12955	4377 aa	Known RBP	12.75	□□□□□ -0.37
PTPN6-222	ENST00000543744	KMT2B	Q9UMN6	2715 aa	Predicted RBP	12.74	□□□□□ -0.37
PTPN6-222	ENST00000543744	PCP4	P48539	62 aa		12.74	□□□□□ -0.37
PTPN6-222	ENST00000543744	C16orf74	Q96GX8	76 aa		12.74	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms