RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TRGC1P0CF51 173 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 RPS10P46783 165 aaKnown RBP8.53□□□□□ -1.04
SS18-204ENST00000539244 SULT1A2P50226 295 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 COX6A2Q02221 97 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 OR2D3Q8NGH3 330 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 SMIM12Q96EX1 92 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 TPPP3Q9BW30 176 aa8.53□□□□□ -1.04
SS18-204ENST00000539244 PRR3P79522 188 aaKnown RBP8.52□□□□□ -1.05
SS18-204ENST00000539244 COTL1Q14019 142 aa8.52□□□□□ -1.05
SS18-204ENST00000539244 CENPWQ5EE01 88 aa8.52□□□□□ -1.05
SS18-204ENST00000539244 DPH3P1Q9H4G8 78 aa8.52□□□□□ -1.05
SS18-204ENST00000539244 MANBALQ9NQG1 85 aa8.52□□□□□ -1.05
SS18-204ENST00000539244 BATF3Q9NR55 127 aa8.52□□□□□ -1.05
SS18-204ENST00000539244 XKRY2A2RUG3 117 aa8.51□□□□□ -1.05
SS18-204ENST00000539244 GAGE12HA6NDE8 117 aa8.51□□□□□ -1.05
SS18-204ENST00000539244 AMTP48728 403 aa8.51□□□□□ -1.05
SS18-204ENST00000539244 PRSS3P2Q8NHM4 247 aa8.51□□□□□ -1.05
SS18-204ENST00000539244 GVQW2A0A096LPI5 108 aaPredicted RBP8.5□□□□□ -1.05
SS18-204ENST00000539244 HMSDA8MTL9 139 aa8.5□□□□□ -1.05
SS18-204ENST00000539244 SMLR1H3BR10 107 aa8.5□□□□□ -1.05
SS18-204ENST00000539244 NTF3P20783 257 aa8.5□□□□□ -1.05
SS18-204ENST00000539244 CCL20P78556 96 aa8.5□□□□□ -1.05
SS18-204ENST00000539244 MAJINQ3KP22 176 aa8.5□□□□□ -1.05
SS18-204ENST00000539244 LYZL1Q6UWQ5 148 aa8.5□□□□□ -1.05
SS18-204ENST00000539244 CNFNQ9BYD5 112 aa8.5□□□□□ -1.05
SS18-204ENST00000539244 TRAV1-1A0A0B4J248 108 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 A0A0J9YXV3 536 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 BCL2L11O43521 198 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 CTRLP40313 264 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 HIGD2BQ4VC39 106 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 C9orf62Q8N4C0 152 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 STPG4Q8N801 248 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 GTSF1Q8WW33 167 aa8.49□□□□□ -1.05
SS18-204ENST00000539244 CHCHD10Q8WYQ3 142 aaPredicted RBP8.49□□□□□ -1.05
SS18-204ENST00000539244 RNF213Q63HN8 5207 aa8.48□□□□□ -1.05
SS18-204ENST00000539244 IGKV2-24A0A0C4DH68 120 aa8.48□□□□□ -1.05
SS18-204ENST00000539244 IFNA1P01562 189 aa8.48□□□□□ -1.05
SS18-204ENST00000539244 KRTAP10-8P60410 259 aa8.48□□□□□ -1.05
SS18-204ENST00000539244 GNG13Q9P2W3 67 aa8.48□□□□□ -1.05
SS18-204ENST00000539244 A0A096LNI7 61 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 KANTRA0A1W2PQU2 76 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 RAB19A4D1S5 217 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 H7C423 109 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 NCR2O95944 276 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 GNG4P50150 75 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 EIF5AP63241 154 aaKnown RBP8.47□□□□□ -1.05
SS18-204ENST00000539244 SPINK6Q6UWN8 80 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 GATD1Q8NB37 220 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 BIN3Q9NQY0 253 aa8.47□□□□□ -1.05
SS18-204ENST00000539244 TRBV20OR9-2A0A075B6H5 130 aa8.46□□□□□ -1.06
SS18-204ENST00000539244 IGKV3OR2-268A0A0C4DH90 116 aa8.46□□□□□ -1.06
SS18-204ENST00000539244 FOXI1Q12951 378 aa8.46□□□□□ -1.06
SS18-204ENST00000539244 Q6ZNX1 250 aa8.46□□□□□ -1.06
SS18-204ENST00000539244 LINC00474Q9P2X8 69 aa8.46□□□□□ -1.06
SS18-204ENST00000539244 PKIGQ9Y2B9 76 aa8.46□□□□□ -1.06
SS18-204ENST00000539244 PDE6DO43924 150 aa8.45□□□□□ -1.06
SS18-204ENST00000539244 ODF1Q14990 250 aa8.45□□□□□ -1.06
SS18-204ENST00000539244 RGS21Q2M5E4 152 aa8.45□□□□□ -1.06
SS18-204ENST00000539244 AMMECR1LQ6DCA0 310 aa8.45□□□□□ -1.06
SS18-204ENST00000539244 TRAV26-2A0A0B4J265 109 aa8.44□□□□□ -1.06
SS18-204ENST00000539244 FGF6P10767 208 aa8.44□□□□□ -1.06
SS18-204ENST00000539244 ZNF25P17030 456 aaPredicted RBP8.44□□□□□ -1.06
SS18-204ENST00000539244 MEF2BQ02080 365 aaPredicted RBP8.44□□□□□ -1.06
SS18-204ENST00000539244 SRSF9Q13242 221 aaKnown RBP eCLIP8.44□□□□□ -1.06
SS18-204ENST00000539244 TWIST1Q15672 202 aa8.44□□□□□ -1.06
SS18-204ENST00000539244 REG3GQ6UW15 175 aa8.44□□□□□ -1.06
SS18-204ENST00000539244 NUDT10Q8NFP7 164 aa8.44□□□□□ -1.06
SS18-204ENST00000539244 LYPD6BQ8NI32 183 aa8.44□□□□□ -1.06
SS18-204ENST00000539244 NUDT11Q96G61 164 aa8.44□□□□□ -1.06
SS18-204ENST00000539244 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.43□□□□□ -1.06
SS18-204ENST00000539244 IGKV2-29A2NJV5 120 aaPredicted RBP8.43□□□□□ -1.06
SS18-204ENST00000539244 TEX46H3BTG2 121 aa8.43□□□□□ -1.06
SS18-204ENST00000539244 APCSP02743 223 aa8.43□□□□□ -1.06
SS18-204ENST00000539244 RNASEKQ6P5S7 137 aaKnown RBP8.43□□□□□ -1.06
SS18-204ENST00000539244 OR5A1Q8NGJ0 315 aa8.43□□□□□ -1.06
SS18-204ENST00000539244 RPL39LQ96EH5 51 aaKnown RBP8.43□□□□□ -1.06
SS18-204ENST00000539244 TEX261Q6UWH6 196 aa8.42□□□□□ -1.06
SS18-204ENST00000539244 Q6ZRP5 223 aa8.42□□□□□ -1.06
SS18-204ENST00000539244 MED9Q9NWA0 146 aa8.42□□□□□ -1.06
SS18-204ENST00000539244 IGHV1-58A0A0C4DH39 117 aa8.41□□□□□ -1.06
SS18-204ENST00000539244 FAM231BA6NCW3 169 aa8.41□□□□□ -1.06
SS18-204ENST00000539244 SDHAF1A6NFY7 115 aa8.41□□□□□ -1.06
SS18-204ENST00000539244 CARD19Q96LW7 228 aa8.41□□□□□ -1.06
SS18-204ENST00000539244 RPP21Q9H633 154 aaKnown RBP8.41□□□□□ -1.06
SS18-204ENST00000539244 TRBV6-5A0A0K0K1A5 114 aa8.4□□□□□ -1.06
SS18-204ENST00000539244 LINC00959A0A1B0GUT2 108 aa8.4□□□□□ -1.06
SS18-204ENST00000539244 BCL2P10415 239 aa8.4□□□□□ -1.06
SS18-204ENST00000539244 XCL1P47992 114 aa8.4□□□□□ -1.06
SS18-204ENST00000539244 I3L3M4 83 aa8.39□□□□□ -1.07
SS18-204ENST00000539244 CCL25O15444 150 aa8.39□□□□□ -1.07
SS18-204ENST00000539244 ESDP10768 282 aa8.39□□□□□ -1.07
SS18-204ENST00000539244 EIF5AL1Q6IS14 154 aaKnown RBP8.39□□□□□ -1.07
SS18-204ENST00000539244 SMIM15Q7Z3B0 74 aa8.39□□□□□ -1.07
SS18-204ENST00000539244 LINC00526Q96FQ7 95 aa8.39□□□□□ -1.07
SS18-204ENST00000539244 BTF3L4Q96K17 158 aa8.39□□□□□ -1.07
SS18-204ENST00000539244 FAM210AQ96ND0 272 aa8.39□□□□□ -1.07
SS18-204ENST00000539244 RNASE7Q9H1E1 156 aaKnown RBP8.39□□□□□ -1.07
SS18-204ENST00000539244 K7EN84 100 aa8.38□□□□□ -1.07
SS18-204ENST00000539244 PTTG1IPP53801 180 aa8.38□□□□□ -1.07
SS18-204ENST00000539244 FOXA3P55318 350 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms