RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 RBMY1DP0C7P1 496 aaKnown RBP14.08□□□□□ -0.16
VPS28-213ENST00000530983 PYGO1Q9Y3Y4 419 aa14.08□□□□□ -0.16
VPS28-213ENST00000530983 A8MTW9 85 aa14.07□□□□□ -0.16
VPS28-213ENST00000530983 BEX4Q9NWD9 120 aaPredicted RBP14.07□□□□□ -0.16
VPS28-213ENST00000530983 H3BMM0 161 aa14.07□□□□□ -0.16
VPS28-213ENST00000530983 SCGB1C2P0DMR2 95 aa14.07□□□□□ -0.16
VPS28-213ENST00000530983 CD28P10747 220 aa14.06□□□□□ -0.16
VPS28-213ENST00000530983 Q9UF83 564 aa14.06□□□□□ -0.16
VPS28-213ENST00000530983 CENPEQ02224 2701 aa14.06□□□□□ -0.16
VPS28-213ENST00000530983 TRAV2A0A0B4J234 112 aa14.06□□□□□ -0.16
VPS28-213ENST00000530983 CEMP1Q6PRD7 247 aaPredicted RBP14.06□□□□□ -0.16
VPS28-213ENST00000530983 MUSTN1Q8IVN3 82 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 TMEM263Q8WUH6 116 aaKnown RBP14.04□□□□□ -0.16
VPS28-213ENST00000530983 ACACBO00763 2458 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 CR1P17927 2039 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 IGHV3-30-3P0DP02 117 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 MRPS36P82909 103 aaKnown RBP14.04□□□□□ -0.16
VPS28-213ENST00000530983 RAX2Q96IS3 184 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 DUX3Q96PT4 197 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 ANAPC13Q9BS18 74 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 SPXQ9BT56 116 aa14.04□□□□□ -0.16
VPS28-213ENST00000530983 A0A0J9YXY3 114 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 M0R2P5 195 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 IGHV3-33P01772 117 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 Q6ZSN1 163 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 TNFRSF18Q9Y5U5 241 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 SLC25A20O43772 301 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 ZFAND6Q6FIF0 208 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 TMEM61Q8N0U2 210 aa14.03□□□□□ -0.16
VPS28-213ENST00000530983 A0A0B4J2C4 111 aa14.02□□□□□ -0.16
VPS28-213ENST00000530983 TMEM262E9PQX1 116 aa14.02□□□□□ -0.16
VPS28-213ENST00000530983 RNASE13Q5GAN3 156 aaKnown RBP14.02□□□□□ -0.16
VPS28-213ENST00000530983 CITED1Q99966 193 aa14.02□□□□□ -0.16
VPS28-213ENST00000530983 IGHV4-31P0DP07 118 aa14.02□□□□□ -0.17
VPS28-213ENST00000530983 TIMM21Q9BVV7 248 aa14.02□□□□□ -0.17
VPS28-213ENST00000530983 PRRC2AP48634 2157 aaKnown RBP14.02□□□□□ -0.17
VPS28-213ENST00000530983 ADARB2-AS1A8MUL3 147 aa14.01□□□□□ -0.17
VPS28-213ENST00000530983 C9JAW5 83 aa14.01□□□□□ -0.17
VPS28-213ENST00000530983 TRAV8-3A0A0A6YYJ7 113 aa14.01□□□□□ -0.17
VPS28-213ENST00000530983 TEX29Q8N6K0 151 aa14.01□□□□□ -0.17
VPS28-213ENST00000530983 CHCHD7Q9BUK0 85 aa14.01□□□□□ -0.17
VPS28-213ENST00000530983 ZNF415Q09FC8 603 aa14□□□□□ -0.17
VPS28-213ENST00000530983 PIK3CD-AS1Q5SR53 167 aa14□□□□□ -0.17
VPS28-213ENST00000530983 LITAFQ99732 161 aa14□□□□□ -0.17
VPS28-213ENST00000530983 TEX15Q9BXT5 2789 aa14□□□□□ -0.17
VPS28-213ENST00000530983 LINC01600Q96MT4 127 aa13.99□□□□□ -0.17
VPS28-213ENST00000530983 SS18L2Q9UHA2 77 aa13.99□□□□□ -0.17
VPS28-213ENST00000530983 UBE2D4Q9Y2X8 147 aa13.99□□□□□ -0.17
VPS28-213ENST00000530983 FAM208BQ5VWN6 2430 aa13.99□□□□□ -0.17
VPS28-213ENST00000530983 C11orf72Q8NBR9 251 aa13.98□□□□□ -0.17
VPS28-213ENST00000530983 MAP6D1Q9H9H5 199 aa13.98□□□□□ -0.17
VPS28-213ENST00000530983 H7C2G1 150 aa13.98□□□□□ -0.17
VPS28-213ENST00000530983 NHLRC4P0CG21 123 aaPredicted RBP13.98□□□□□ -0.17
VPS28-213ENST00000530983 Q8N2B8 174 aa13.98□□□□□ -0.17
VPS28-213ENST00000530983 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.97□□□□□ -0.17
VPS28-213ENST00000530983 IGHV1-58A0A0C4DH39 117 aa13.97□□□□□ -0.17
VPS28-213ENST00000530983 MYO9AB2RTY4 2548 aa13.97□□□□□ -0.17
VPS28-213ENST00000530983 PEMTQ9UBM1 199 aa13.97□□□□□ -0.17
VPS28-213ENST00000530983 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.96□□□□□ -0.17
VPS28-213ENST00000530983 TINCRA0A1B0GVN0 87 aa13.96□□□□□ -0.17
VPS28-213ENST00000530983 IGKV2-29A2NJV5 120 aaPredicted RBP13.96□□□□□ -0.17
VPS28-213ENST00000530983 GAGE5Q13069 117 aa13.96□□□□□ -0.17
VPS28-213ENST00000530983 GAGE6Q13070 117 aa13.96□□□□□ -0.17
VPS28-213ENST00000530983 SPANXA1Q9NS26 97 aa13.96□□□□□ -0.17
VPS28-213ENST00000530983 LRRK2Q5S007 2527 aa13.96□□□□□ -0.17
VPS28-213ENST00000530983 C4orf3Q8WVX3 66 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 LINC01587Q99440 93 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 LINC00467Q9BRT7 94 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 PTPN13Q12923 2485 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 IGHV3-53P01767 116 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 PRB1P04280 392 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 ADAMTSL4-AS1Q5T5F5 129 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 HIST2H2BDQ6DRA6 164 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 VSIG2Q96IQ7 327 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 NDUFA12Q9UI09 145 aa13.95□□□□□ -0.18
VPS28-213ENST00000530983 IGHV3-38A0A0C4DH36 116 aa13.94□□□□□ -0.18
VPS28-213ENST00000530983 A8MZ25 164 aa13.94□□□□□ -0.18
VPS28-213ENST00000530983 CRLF1O75462 422 aa13.94□□□□□ -0.18
VPS28-213ENST00000530983 NTN5Q8WTR8 489 aaPredicted RBP13.94□□□□□ -0.18
VPS28-213ENST00000530983 AKAP9Q99996 3911 aa13.94□□□□□ -0.18
VPS28-213ENST00000530983 TRAV4A0A0B4J268 109 aa13.93□□□□□ -0.18
VPS28-213ENST00000530983 B5MCH6 92 aa13.93□□□□□ -0.18
VPS28-213ENST00000530983 BEAN1Q3B7T3 259 aa13.93□□□□□ -0.18
VPS28-213ENST00000530983 KHDC1LQ5JSQ8 128 aa13.93□□□□□ -0.18
VPS28-213ENST00000530983 DYNLRB2Q8TF09 96 aa13.93□□□□□ -0.18
VPS28-213ENST00000530983 Q1RN00 199 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 DEFB114Q30KQ6 69 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 PRSS2P07478 247 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 KRTAP10-9P60411 292 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 GAGE2BQ13066 116 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 GAGE2EQ4V326 116 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 SPANXDQ9BXN6 97 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 SPANXCQ9NY87 97 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 GAGE2DQ9UEU5 116 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 ZNF462Q96JM2 2506 aa13.92□□□□□ -0.18
VPS28-213ENST00000530983 ZNF469Q96JG9 3925 aaPredicted RBP13.92□□□□□ -0.18
VPS28-213ENST00000530983 INSP01308 110 aa13.91□□□□□ -0.18
VPS28-213ENST00000530983 DNAJC30Q96LL9 226 aa13.91□□□□□ -0.18
VPS28-213ENST00000530983 ABCA12Q86UK0 2595 aa13.91□□□□□ -0.18
VPS28-213ENST00000530983 ZFYVE26Q68DK2 2539 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms