RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CCL20P78556 96 aa14.81□□□□□ -0.04
CPSF1-202ENST00000527827 LINC01600Q96MT4 127 aa14.81□□□□□ -0.04
CPSF1-202ENST00000527827 RPS10P46783 165 aaKnown RBP14.8□□□□□ -0.04
CPSF1-202ENST00000527827 AMTP48728 403 aa14.8□□□□□ -0.04
CPSF1-202ENST00000527827 COTL1Q14019 142 aa14.8□□□□□ -0.04
CPSF1-202ENST00000527827 CFAP161Q6P656 301 aa14.8□□□□□ -0.04
CPSF1-202ENST00000527827 PRSS3P2Q8NHM4 247 aa14.8□□□□□ -0.04
CPSF1-202ENST00000527827 DPH3P1Q9H4G8 78 aa14.8□□□□□ -0.04
CPSF1-202ENST00000527827 BATF3Q9NR55 127 aa14.8□□□□□ -0.04
CPSF1-202ENST00000527827 F2Z2F3 143 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 TRGC1P0CF51 173 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 ODF1Q14990 250 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 MAJINQ3KP22 176 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 HIGD2BQ4VC39 106 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 LYZL1Q6UWQ5 148 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 MANBALQ9NQG1 85 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 RNF213Q63HN8 5207 aa14.79□□□□□ -0.04
CPSF1-202ENST00000527827 RAB19A4D1S5 217 aa14.78□□□□□ -0.04
CPSF1-202ENST00000527827 NDUFS6O75380 124 aaKnown RBP14.78□□□□□ -0.04
CPSF1-202ENST00000527827 NTF3P20783 257 aa14.78□□□□□ -0.04
CPSF1-202ENST00000527827 PRR3P79522 188 aaKnown RBP14.78□□□□□ -0.04
CPSF1-202ENST00000527827 GTSF1Q8WW33 167 aa14.78□□□□□ -0.04
CPSF1-202ENST00000527827 GNG13Q9P2W3 67 aa14.78□□□□□ -0.04
CPSF1-202ENST00000527827 IGKV2-24A0A0C4DH68 120 aa14.77□□□□□ -0.05
CPSF1-202ENST00000527827 IGKV3OR2-268A0A0C4DH90 116 aa14.77□□□□□ -0.05
CPSF1-202ENST00000527827 BCL2L11O43521 198 aa14.76□□□□□ -0.05
CPSF1-202ENST00000527827 XKRY2A2RUG3 117 aa14.75□□□□□ -0.05
CPSF1-202ENST00000527827 STPG4Q8N801 248 aa14.75□□□□□ -0.05
CPSF1-202ENST00000527827 CHCHD10Q8WYQ3 142 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-202ENST00000527827 SMIM12Q96EX1 92 aa14.75□□□□□ -0.05
CPSF1-202ENST00000527827 KANTRA0A1W2PQU2 76 aa14.74□□□□□ -0.05
CPSF1-202ENST00000527827 HMSDA8MTL9 139 aa14.74□□□□□ -0.05
CPSF1-202ENST00000527827 IFNA1P01562 189 aa14.74□□□□□ -0.05
CPSF1-202ENST00000527827 GNG4P50150 75 aa14.74□□□□□ -0.05
CPSF1-202ENST00000527827 TRBV20OR9-2A0A075B6H5 130 aa14.73□□□□□ -0.05
CPSF1-202ENST00000527827 GVQW2A0A096LPI5 108 aaPredicted RBP14.73□□□□□ -0.05
CPSF1-202ENST00000527827 TRAV1-1A0A0B4J248 108 aa14.73□□□□□ -0.05
CPSF1-202ENST00000527827 CTRLP40313 264 aa14.73□□□□□ -0.05
CPSF1-202ENST00000527827 C9orf62Q8N4C0 152 aa14.73□□□□□ -0.05
CPSF1-202ENST00000527827 GATD1Q8NB37 220 aa14.73□□□□□ -0.05
CPSF1-202ENST00000527827 LYPD6BQ8NI32 183 aa14.73□□□□□ -0.05
CPSF1-202ENST00000527827 A0A096LNI7 61 aa14.72□□□□□ -0.05
CPSF1-202ENST00000527827 Q6ZNX1 250 aa14.72□□□□□ -0.05
CPSF1-202ENST00000527827 TRAV26-2A0A0B4J265 109 aa14.71□□□□□ -0.05
CPSF1-202ENST00000527827 A0A0J9YXV3 536 aa14.71□□□□□ -0.05
CPSF1-202ENST00000527827 RGS21Q2M5E4 152 aa14.71□□□□□ -0.05
CPSF1-202ENST00000527827 CNFNQ9BYD5 112 aa14.71□□□□□ -0.05
CPSF1-202ENST00000527827 KRTAP10-8P60410 259 aa14.7□□□□□ -0.06
CPSF1-202ENST00000527827 EIF5AP63241 154 aaKnown RBP14.7□□□□□ -0.06
CPSF1-202ENST00000527827 AMMECR1LQ6DCA0 310 aa14.7□□□□□ -0.06
CPSF1-202ENST00000527827 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.69□□□□□ -0.06
CPSF1-202ENST00000527827 IGKV2-29A2NJV5 120 aaPredicted RBP14.69□□□□□ -0.06
CPSF1-202ENST00000527827 FOXI1Q12951 378 aa14.69□□□□□ -0.06
CPSF1-202ENST00000527827 TWIST1Q15672 202 aa14.69□□□□□ -0.06
CPSF1-202ENST00000527827 NUDT10Q8NFP7 164 aa14.69□□□□□ -0.06
CPSF1-202ENST00000527827 NUDT11Q96G61 164 aa14.69□□□□□ -0.06
CPSF1-202ENST00000527827 RNASEKQ6P5S7 137 aaKnown RBP14.68□□□□□ -0.06
CPSF1-202ENST00000527827 RPL39LQ96EH5 51 aaKnown RBP14.68□□□□□ -0.06
CPSF1-202ENST00000527827 NCR2O95944 276 aa14.67□□□□□ -0.06
CPSF1-202ENST00000527827 MEF2BQ02080 365 aaPredicted RBP14.67□□□□□ -0.06
CPSF1-202ENST00000527827 SPINK6Q6UWN8 80 aa14.67□□□□□ -0.06
CPSF1-202ENST00000527827 BIN3Q9NQY0 253 aa14.67□□□□□ -0.06
CPSF1-202ENST00000527827 MED9Q9NWA0 146 aa14.67□□□□□ -0.06
CPSF1-202ENST00000527827 H7C423 109 aa14.66□□□□□ -0.06
CPSF1-202ENST00000527827 PDE6DO43924 150 aa14.66□□□□□ -0.06
CPSF1-202ENST00000527827 FGF6P10767 208 aa14.66□□□□□ -0.06
CPSF1-202ENST00000527827 APCSP02743 223 aa14.64□□□□□ -0.07
CPSF1-202ENST00000527827 SRSF9Q13242 221 aaKnown RBP eCLIP14.64□□□□□ -0.07
CPSF1-202ENST00000527827 FOXA3P55318 350 aaPredicted RBP14.63□□□□□ -0.07
CPSF1-202ENST00000527827 REG3GQ6UW15 175 aa14.63□□□□□ -0.07
CPSF1-202ENST00000527827 OR5A1Q8NGJ0 315 aa14.63□□□□□ -0.07
CPSF1-202ENST00000527827 LINC00526Q96FQ7 95 aa14.63□□□□□ -0.07
CPSF1-202ENST00000527827 LINC00474Q9P2X8 69 aa14.63□□□□□ -0.07
CPSF1-202ENST00000527827 SDHAF1A6NFY7 115 aa14.62□□□□□ -0.07
CPSF1-202ENST00000527827 XCL1P47992 114 aa14.62□□□□□ -0.07
CPSF1-202ENST00000527827 RNASE7Q9H1E1 156 aaKnown RBP14.62□□□□□ -0.07
CPSF1-202ENST00000527827 RPP21Q9H633 154 aaKnown RBP14.62□□□□□ -0.07
CPSF1-202ENST00000527827 FAM231BA6NCW3 169 aa14.61□□□□□ -0.07
CPSF1-202ENST00000527827 TEX46H3BTG2 121 aa14.61□□□□□ -0.07
CPSF1-202ENST00000527827 ZNF25P17030 456 aaPredicted RBP14.61□□□□□ -0.07
CPSF1-202ENST00000527827 IGHV1-58A0A0C4DH39 117 aa14.6□□□□□ -0.07
CPSF1-202ENST00000527827 LINC00959A0A1B0GUT2 108 aa14.6□□□□□ -0.07
CPSF1-202ENST00000527827 K7EN84 100 aa14.6□□□□□ -0.07
CPSF1-202ENST00000527827 CCL25O15444 150 aa14.6□□□□□ -0.07
CPSF1-202ENST00000527827 BCL2P10415 239 aa14.6□□□□□ -0.07
CPSF1-202ENST00000527827 CARD19Q96LW7 228 aa14.6□□□□□ -0.07
CPSF1-202ENST00000527827 PKIGQ9Y2B9 76 aa14.59□□□□□ -0.07
CPSF1-202ENST00000527827 Q6ZRP5 223 aa14.58□□□□□ -0.08
CPSF1-202ENST00000527827 OCC1Q8TAD7 63 aa14.58□□□□□ -0.08
CPSF1-202ENST00000527827 TEX261Q6UWH6 196 aa14.57□□□□□ -0.08
CPSF1-202ENST00000527827 SMIM15Q7Z3B0 74 aa14.57□□□□□ -0.08
CPSF1-202ENST00000527827 BTF3L4Q96K17 158 aa14.57□□□□□ -0.08
CPSF1-202ENST00000527827 I3L3M4 83 aa14.56□□□□□ -0.08
CPSF1-202ENST00000527827 ESDP10768 282 aa14.56□□□□□ -0.08
CPSF1-202ENST00000527827 PMCHP20382 165 aa14.56□□□□□ -0.08
CPSF1-202ENST00000527827 EIF5AL1Q6IS14 154 aaKnown RBP14.56□□□□□ -0.08
CPSF1-202ENST00000527827 TMEM101Q96IK0 257 aa14.56□□□□□ -0.08
CPSF1-202ENST00000527827 TRBV6-5A0A0K0K1A5 114 aa14.55□□□□□ -0.08
CPSF1-202ENST00000527827 SYCNQ0VAF6 134 aa14.55□□□□□ -0.08
CPSF1-202ENST00000527827 GAS8-AS1O95177 125 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms