RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 Q8N8P6 123 aa10.48□□□□□ -0.73
LSM1-203ENST00000520755 UPK3BQ9BT76 320 aa10.48□□□□□ -0.73
LSM1-203ENST00000520755 Q9H8V8 135 aa10.48□□□□□ -0.73
LSM1-203ENST00000520755 DNAH6Q9C0G6 4158 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 KMT2AQ03164 3969 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 TRBV6-8A0A0A6YYG3 113 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 M0R2N4 97 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 TCAPO15273 167 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BKO60814 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BJP06899 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 PMCHP20382 165 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BOP23527 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BBP33778 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BDP58876 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BCP62807 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 COTL1Q14019 142 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST2H2BEQ16778 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BHQ93079 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BNQ99877 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 HIST1H2BMQ99879 126 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 CHCHD7Q9BUK0 85 aa10.47□□□□□ -0.73
LSM1-203ENST00000520755 LINC01546A6NGU7 62 aa10.46□□□□□ -0.73
LSM1-203ENST00000520755 LINC00310P59036 64 aa10.46□□□□□ -0.73
LSM1-203ENST00000520755 LELP1Q5T871 98 aa10.46□□□□□ -0.73
LSM1-203ENST00000520755 WFDC10BQ8IUB3 73 aa10.46□□□□□ -0.73
LSM1-203ENST00000520755 SIVA1O15304 175 aa10.45□□□□□ -0.74
LSM1-203ENST00000520755 ESDP10768 282 aa10.45□□□□□ -0.74
LSM1-203ENST00000520755 KIR2DL4Q99706 377 aa10.45□□□□□ -0.74
LSM1-203ENST00000520755 NXT2Q9NPJ8 142 aaKnown RBP10.45□□□□□ -0.74
LSM1-203ENST00000520755 TRAV8-6A0A0B4J262 113 aa10.44□□□□□ -0.74
LSM1-203ENST00000520755 IGHV1-24A0A0C4DH33 117 aa10.44□□□□□ -0.74
LSM1-203ENST00000520755 AMTP48728 403 aa10.44□□□□□ -0.74
LSM1-203ENST00000520755 Q0VG73 95 aa10.44□□□□□ -0.74
LSM1-203ENST00000520755 TMEM97Q5BJF2 176 aa10.44□□□□□ -0.74
LSM1-203ENST00000520755 Q8N3U1 123 aa10.44□□□□□ -0.74
LSM1-203ENST00000520755 TRBV25-1A0A075B6N4 114 aa10.43□□□□□ -0.74
LSM1-203ENST00000520755 C1orf196B1AJZ1 125 aa10.43□□□□□ -0.74
LSM1-203ENST00000520755 FCER1GP30273 86 aa10.43□□□□□ -0.74
LSM1-203ENST00000520755 PRSS3P2Q8NHM4 247 aa10.43□□□□□ -0.74
LSM1-203ENST00000520755 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.42□□□□□ -0.74
LSM1-203ENST00000520755 NBDYA0A0U1RRE5 68 aa10.42□□□□□ -0.74
LSM1-203ENST00000520755 IGKV2-29A2NJV5 120 aaPredicted RBP10.42□□□□□ -0.74
LSM1-203ENST00000520755 NIT1Q86X76 327 aa10.42□□□□□ -0.74
LSM1-203ENST00000520755 TMEM243Q9BU79 118 aa10.42□□□□□ -0.74
LSM1-203ENST00000520755 A0A096LNJ9 63 aa10.41□□□□□ -0.74
LSM1-203ENST00000520755 K7EMI3 77 aa10.41□□□□□ -0.74
LSM1-203ENST00000520755 RNASEKQ6P5S7 137 aaKnown RBP10.41□□□□□ -0.74
LSM1-203ENST00000520755 FA2HQ7L5A8 372 aa10.41□□□□□ -0.74
LSM1-203ENST00000520755 NUPR1O60356 82 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 SERF1AO75920 110 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 LINC00614P0C842 121 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 RPL39P62891 51 aaKnown RBP10.4□□□□□ -0.74
LSM1-203ENST00000520755 GAGE6Q13070 117 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 LAGE3Q14657 143 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 Q6ZR54 194 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 C20orf203Q8NBC4 194 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 CHCHD5Q9BSY4 110 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 AP5S1Q9NUS5 200 aa10.4□□□□□ -0.74
LSM1-203ENST00000520755 IGHV3-30P01768 117 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 IGHV3-33P01772 117 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 DNAH10OSP0CZ25 163 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 IGHV3-30-3P0DP02 117 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 IGHV3-30-5P0DP03 117 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 ORMDL2Q53FV1 153 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 MPV17L2Q567V2 206 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 TTC32Q5I0X7 151 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 BAGE3Q86Y29 109 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 KRTAP1-5Q9BYS1 174 aa10.39□□□□□ -0.75
LSM1-203ENST00000520755 RAB5BP61020 215 aa10.38□□□□□ -0.75
LSM1-203ENST00000520755 PMCHL1Q16048 86 aa10.38□□□□□ -0.75
LSM1-203ENST00000520755 CHCHD1Q96BP2 118 aaKnown RBP10.38□□□□□ -0.75
LSM1-203ENST00000520755 TRAV9-2A0A087WT02 112 aa10.37□□□□□ -0.75
LSM1-203ENST00000520755 FGF6P10767 208 aa10.37□□□□□ -0.75
LSM1-203ENST00000520755 LINC01556Q5JQF7 62 aa10.37□□□□□ -0.75
LSM1-203ENST00000520755 COA6Q5JTJ3 125 aaKnown RBP10.37□□□□□ -0.75
LSM1-203ENST00000520755 C2orf66Q6UXQ4 117 aa10.37□□□□□ -0.75
LSM1-203ENST00000520755 FAM104AQ969W3 186 aa10.37□□□□□ -0.75
LSM1-203ENST00000520755 UBE2D4Q9Y2X8 147 aa10.37□□□□□ -0.75
LSM1-203ENST00000520755 DNAH2Q9P225 4427 aa10.37□□□□□ -0.75
LSM1-203ENST00000520755 H7C423 109 aa10.36□□□□□ -0.75
LSM1-203ENST00000520755 MRPL52Q86TS9 123 aaKnown RBP10.36□□□□□ -0.75
LSM1-203ENST00000520755 Q8N976 141 aa10.36□□□□□ -0.75
LSM1-203ENST00000520755 IGLV4-60A0A075B6I1 120 aa10.35□□□□□ -0.75
LSM1-203ENST00000520755 TMEM262E9PQX1 116 aa10.35□□□□□ -0.75
LSM1-203ENST00000520755 UBE2L6O14933 153 aa10.35□□□□□ -0.75
LSM1-203ENST00000520755 BTF3P20290 206 aaKnown RBP10.35□□□□□ -0.75
LSM1-203ENST00000520755 RBX1P62877 108 aa10.35□□□□□ -0.75
LSM1-203ENST00000520755 TOMM6Q96B49 74 aa10.35□□□□□ -0.75
LSM1-203ENST00000520755 CYSLTR1Q9Y271 337 aa10.35□□□□□ -0.75
LSM1-203ENST00000520755 A0A087WX48 190 aa10.34□□□□□ -0.75
LSM1-203ENST00000520755 HBDP02042 147 aa10.34□□□□□ -0.75
LSM1-203ENST00000520755 NDUFA6P56556 154 aa10.34□□□□□ -0.75
LSM1-203ENST00000520755 C1orf134Q5TEV5 83 aa10.34□□□□□ -0.75
LSM1-203ENST00000520755 FAM19A2Q8N3H0 131 aa10.34□□□□□ -0.75
LSM1-203ENST00000520755 C10orf126Q8N4M7 172 aa10.34□□□□□ -0.75
LSM1-203ENST00000520755 A0A1B0GUV1 79 aa10.33□□□□□ -0.76
LSM1-203ENST00000520755 HSBP1O75506 76 aa10.33□□□□□ -0.76
LSM1-203ENST00000520755 PDZD11Q5EBL8 140 aa10.33□□□□□ -0.76
LSM1-203ENST00000520755 Q6ZUT4 128 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms