RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 FAM167A-AS1Q96KT0 104 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 SMR3AQ99954 134 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 NABP2Q9BQ15 211 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 C20orf78Q9BR46 151 aa4.27□□□□□ -1.73
LSM1-202ENST00000520286 C8orf88P0DMB2 117 aa4.26□□□□□ -1.73
LSM1-202ENST00000520286 FOXA3P55318 350 aaPredicted RBP4.26□□□□□ -1.73
LSM1-202ENST00000520286 KLF14Q8TD94 323 aaPredicted RBP4.26□□□□□ -1.73
LSM1-202ENST00000520286 FXYD5Q96DB9 178 aa4.26□□□□□ -1.73
LSM1-202ENST00000520286 ZNF714Q96N38 554 aa4.26□□□□□ -1.73
LSM1-202ENST00000520286 U3KQK5 164 aa4.26□□□□□ -1.73
LSM1-202ENST00000520286 IGLV2-18A0A075B6J9 118 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 A0A087WX48 190 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 TRAV8-2A0A0B4J237 113 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 TRBV6-1A0A0K0K1D8 114 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 LINC01546A6NGU7 62 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 J3QLI3 93 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 COL8A2P25067 703 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 RRN3P1Q2M238 152 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 SPINK9Q5DT21 86 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 CFAP126Q5VTH2 177 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 Q6AWC8 147 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 Q6Q795 121 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 C16orf47Q6ZP98 133 aaPredicted RBP4.25□□□□□ -1.73
LSM1-202ENST00000520286 DAZ4Q86SG3 579 aaKnown RBP4.25□□□□□ -1.73
LSM1-202ENST00000520286 SBSPONQ8IVN8 264 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 Q8IYB0 196 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 FBXL15Q9H469 300 aa4.25□□□□□ -1.73
LSM1-202ENST00000520286 DAZ1Q9NQZ3 744 aaKnown RBP4.25□□□□□ -1.73
LSM1-202ENST00000520286 AMMECR1Q9Y4X0 333 aaPredicted RBP4.25□□□□□ -1.73
LSM1-202ENST00000520286 TACC2O95359 2948 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 TMEM30CPA0ZSE6 113 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 KRTAP9-6A8MVA2 160 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 K7ERJ3 54 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 APOMO95445 188 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 FSTL3O95633 263 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 OR2H2O95918 312 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 LTAP01374 205 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 PRB2P02812 416 aaPredicted RBP4.24□□□□□ -1.73
LSM1-202ENST00000520286 EVI2AP22794 236 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 DSCR4P56555 118 aaPredicted RBP4.24□□□□□ -1.73
LSM1-202ENST00000520286 GNG3P63215 75 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 PLGLB1Q02325 96 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 OR8A1Q8NGG7 326 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 PPDPFLQ8WWR9 84 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 PRELID3AQ96N28 172 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 AKAP9Q99996 3911 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 NBEAL1Q6ZS30 2694 aa4.24□□□□□ -1.73
LSM1-202ENST00000520286 FBN1P35555 2871 aaKnown RBP4.23□□□□□ -1.73
LSM1-202ENST00000520286 TRBV7-3A0A075B6L6 115 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 IGKV1OR2-108A0A075B7D4 117 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 A0A0J9YW62 118 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 RBP4P02753 201 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 CD24P25063 80 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 UBE2L3P68036 154 aaKnown RBP4.23□□□□□ -1.73
LSM1-202ENST00000520286 C12orf74Q32Q52 190 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 ZFAND6Q6FIF0 208 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 KRTAP5-11Q6L8G4 156 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 LINC00322Q6ZN03 302 aaPredicted RBP4.23□□□□□ -1.73
LSM1-202ENST00000520286 SMIM20Q8N5G0 67 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.23□□□□□ -1.73
LSM1-202ENST00000520286 CARD19Q96LW7 228 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 LINC01600Q96MT4 127 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 TMEM14BQ9NUH8 114 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 UFC1Q9Y3C8 167 aa4.23□□□□□ -1.73
LSM1-202ENST00000520286 CHCHD2Q9Y6H1 151 aaPredicted RBP4.23□□□□□ -1.73
LSM1-202ENST00000520286 DCHS2Q6V1P9 2916 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 PKDREJQ9NTG1 2253 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 TRBV25-1A0A075B6N4 114 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 IGHV3OR16-8A0A075B7F1 116 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 IGKV2D-26A0A0A0MRZ7 120 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 IGHV3-15A0A0B4J1V0 119 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 C5orf49A4QMS7 147 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 FABP5P3A8MUU1 101 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 C16orf90A8MZG2 172 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 HBDP02042 147 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 IGLV7-43P04211 117 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 SLC25A5P05141 298 aaKnown RBP4.22□□□□□ -1.73
LSM1-202ENST00000520286 HSPE1P61604 102 aaKnown RBP4.22□□□□□ -1.73
LSM1-202ENST00000520286 TEN1Q86WV5 123 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 WFDC11Q8NEX6 87 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 IFI27L1Q96BM0 104 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 NHP2Q9NX24 153 aaKnown RBP4.22□□□□□ -1.73
LSM1-202ENST00000520286 VPREB3Q9UKI3 123 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 EPDR1Q9UM22 224 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 HHLA3Q9XRX5 114 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 ACANP16112 2415 aa4.22□□□□□ -1.73
LSM1-202ENST00000520286 PRRC2CQ9Y520 2896 aaKnown RBP4.21□□□□□ -1.73
LSM1-202ENST00000520286 CSPG4Q6UVK1 2322 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 TRAV3A0A0B4J244 114 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 TRAV17A0A0B4J275 112 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 A0A1B0GUT8 65 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 TMEM262E9PQX1 116 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 C15orf65H3BRN8 121 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 ASIPP42127 132 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 ZNF137PP52743 207 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 DLX6P56179 175 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 TCTAP57738 103 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 UBE2D3P61077 147 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 UBE2D2P62837 147 aa4.21□□□□□ -1.74
LSM1-202ENST00000520286 DIAPH2-AS1Q14236 149 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms