RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 Q6ZSN1 163 aa10.76□□□□□ -0.69
NUP54-217ENST00000514987 C1orf158Q8N1D5 194 aa10.76□□□□□ -0.69
NUP54-217ENST00000514987 C11orf44Q8N8P7 122 aa10.76□□□□□ -0.69
NUP54-217ENST00000514987 CENPEQ02224 2701 aa10.76□□□□□ -0.69
NUP54-217ENST00000514987 A0A0J9YXV3 536 aa10.75□□□□□ -0.69
NUP54-217ENST00000514987 PRM2P04554 102 aa10.75□□□□□ -0.69
NUP54-217ENST00000514987 TSPEAR-AS2P59090 65 aa10.75□□□□□ -0.69
NUP54-217ENST00000514987 LYRM7Q5U5X0 104 aa10.75□□□□□ -0.69
NUP54-217ENST00000514987 TMEM263Q8WUH6 116 aaKnown RBP10.75□□□□□ -0.69
NUP54-217ENST00000514987 CHCHD7Q9BUK0 85 aa10.75□□□□□ -0.69
NUP54-217ENST00000514987 TIMM21Q9BVV7 248 aa10.75□□□□□ -0.69
NUP54-217ENST00000514987 TRBV10-1A0A0K0K1A3 114 aa10.74□□□□□ -0.69
NUP54-217ENST00000514987 F8W1H4 67 aa10.74□□□□□ -0.69
NUP54-217ENST00000514987 AZU1P20160 251 aa10.74□□□□□ -0.69
NUP54-217ENST00000514987 UBE2D4Q9Y2X8 147 aa10.74□□□□□ -0.69
NUP54-217ENST00000514987 APCP25054 2843 aa10.74□□□□□ -0.69
NUP54-217ENST00000514987 TINCRA0A1B0GVN0 87 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 NACAE9PAV3 2078 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 CIDEAO60543 219 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 HILS1P60008 231 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 SAP30O75446 220 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 IGHV3-30P01768 117 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 IGHV3-30-5P0DP03 117 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 SMAGPQ0VAQ4 97 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 RNF151Q2KHN1 245 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 HIST2H2BCQ6DN03 193 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 C1QTNF4Q9BXJ3 329 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 CSMD2Q7Z408 3487 aa10.73□□□□□ -0.69
NUP54-217ENST00000514987 ITPR3Q14573 2671 aa10.72□□□□□ -0.69
NUP54-217ENST00000514987 TRGV1A0A0A0MS02 117 aa10.72□□□□□ -0.69
NUP54-217ENST00000514987 IGLV1-51P01701 117 aa10.72□□□□□ -0.69
NUP54-217ENST00000514987 HIST2H2BDQ6DRA6 164 aa10.72□□□□□ -0.69
NUP54-217ENST00000514987 FAM104AQ969W3 186 aa10.72□□□□□ -0.69
NUP54-217ENST00000514987 PGPEP1Q9NXJ5 209 aa10.72□□□□□ -0.69
NUP54-217ENST00000514987 IGHV3OR16-12A0A075B7B8 117 aa10.71□□□□□ -0.69
NUP54-217ENST00000514987 TRAV4A0A0B4J268 109 aa10.71□□□□□ -0.69
NUP54-217ENST00000514987 TMEM238C9JI98 176 aa10.71□□□□□ -0.69
NUP54-217ENST00000514987 RPL36AP83881 106 aaKnown RBP10.71□□□□□ -0.69
NUP54-217ENST00000514987 DAZ2Q13117 558 aaKnown RBP10.71□□□□□ -0.69
NUP54-217ENST00000514987 RPL36ALQ969Q0 106 aaKnown RBP10.71□□□□□ -0.69
NUP54-217ENST00000514987 VPS25Q9BRG1 176 aa10.71□□□□□ -0.69
NUP54-217ENST00000514987 RPL24P83731 157 aaKnown RBP10.7□□□□□ -0.7
NUP54-217ENST00000514987 C16orf74Q96GX8 76 aa10.7□□□□□ -0.7
NUP54-217ENST00000514987 MYO9AB2RTY4 2548 aa10.7□□□□□ -0.7
NUP54-217ENST00000514987 EPG5Q9HCE0 2579 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 IGHV1-58A0A0C4DH39 117 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 G3V4G9 280 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 IGHV3-30-3P0DP02 117 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 DAZ4Q86SG3 579 aaKnown RBP10.69□□□□□ -0.7
NUP54-217ENST00000514987 NDUFA11Q86Y39 141 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 DAZ3Q9NR90 486 aaKnown RBP10.69□□□□□ -0.7
NUP54-217ENST00000514987 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.69□□□□□ -0.7
NUP54-217ENST00000514987 IGKV2-29A2NJV5 120 aaPredicted RBP10.69□□□□□ -0.7
NUP54-217ENST00000514987 TIRAPP58753 221 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 DGAT2L7PQ6IED9 249 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 GEMIN7Q9H840 131 aaKnown RBP10.69□□□□□ -0.7
NUP54-217ENST00000514987 Q9UF83 564 aa10.69□□□□□ -0.7
NUP54-217ENST00000514987 K7EQD1 137 aa10.68□□□□□ -0.7
NUP54-217ENST00000514987 APOMO95445 188 aa10.68□□□□□ -0.7
NUP54-217ENST00000514987 GAGE13Q4V321 117 aa10.68□□□□□ -0.7
NUP54-217ENST00000514987 CEMP1Q6PRD7 247 aaPredicted RBP10.68□□□□□ -0.7
NUP54-217ENST00000514987 PRO1854Q9UHT4 67 aa10.68□□□□□ -0.7
NUP54-217ENST00000514987 CSDC2Q9Y534 153 aaKnown RBP10.68□□□□□ -0.7
NUP54-217ENST00000514987 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.67□□□□□ -0.7
NUP54-217ENST00000514987 TSPAN13O95857 204 aa10.67□□□□□ -0.7
NUP54-217ENST00000514987 Q6ZUT4 128 aa10.67□□□□□ -0.7
NUP54-217ENST00000514987 TRBV20-1A0A075B6N2 111 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 IGHV3-38A0A0C4DH36 116 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 A0A0J9YXY3 114 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 H3BMG7 143 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 CFC1BP0CG36 223 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 CFC1P0CG37 223 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 UBE2D3P61077 147 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 UBE2D2P62837 147 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 C10orf126Q8N4M7 172 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 VSIG2Q96IQ7 327 aa10.66□□□□□ -0.7
NUP54-217ENST00000514987 IGHV3-64A0A075B6Q5 118 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 IGLV5-45A0A087WSX0 123 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 A0A0B4J2C4 111 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 ADARB2-AS1A8MUL3 147 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 J3QR89 54 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 Q6ZTI0 123 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 OVOL2Q9BRP0 275 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 C19orf73Q9NVV2 129 aa10.65□□□□□ -0.7
NUP54-217ENST00000514987 GIG44P09565 113 aaPredicted RBP10.65□□□□□ -0.71
NUP54-217ENST00000514987 FAM19A3Q7Z5A8 133 aa10.65□□□□□ -0.71
NUP54-217ENST00000514987 TIMM17BO60830 172 aa10.64□□□□□ -0.71
NUP54-217ENST00000514987 HERVK_113P63121 156 aa10.64□□□□□ -0.71
NUP54-217ENST00000514987 GTSF1LQ9H1H1 148 aa10.64□□□□□ -0.71
NUP54-217ENST00000514987 NOP10Q9NPE3 64 aaKnown RBP10.64□□□□□ -0.71
NUP54-217ENST00000514987 NDUFA12Q9UI09 145 aa10.64□□□□□ -0.71
NUP54-217ENST00000514987 LOC107984156A0A0G2JMH3 177 aa10.63□□□□□ -0.71
NUP54-217ENST00000514987 A4D1N5 150 aa10.63□□□□□ -0.71
NUP54-217ENST00000514987 RNASE13Q5GAN3 156 aaKnown RBP10.63□□□□□ -0.71
NUP54-217ENST00000514987 ZFAND6Q6FIF0 208 aa10.63□□□□□ -0.71
NUP54-217ENST00000514987 ARL17AQ8IVW1 177 aa10.63□□□□□ -0.71
NUP54-217ENST00000514987 SPANXDQ9BXN6 97 aa10.63□□□□□ -0.71
NUP54-217ENST00000514987 SPANXCQ9NY87 97 aa10.63□□□□□ -0.71
NUP54-217ENST00000514987 FLNAP21333 2647 aaKnown RBP10.62□□□□□ -0.71
NUP54-217ENST00000514987 H7C423 109 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms