RNA–Protein interactions for RNA: ENST00000513143.5

PDPN-210, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,305 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-210ENST00000513143 HIST1H2BDP58876 126 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 HIST1H2BCP62807 126 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 Q0VG73 95 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 COTL1Q14019 142 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 HIST2H2BEQ16778 126 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 ESRGQ1W209 222 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.64□□□□□ -1.03
PDPN-210ENST00000513143 CASC10Q5T4H9 136 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 NTM-AS1Q6ZSK4 140 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 PRSS3P2Q8NHM4 247 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 HIST1H2BHQ93079 126 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 HIST1H2BNQ99877 126 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 HIST1H2BMQ99879 126 aa8.64□□□□□ -1.03
PDPN-210ENST00000513143 PLECQ15149 4684 aaKnown RBP8.63□□□□□ -1.03
PDPN-210ENST00000513143 TRBV6-8A0A0A6YYG3 113 aa8.63□□□□□ -1.03
PDPN-210ENST00000513143 LINC01546A6NGU7 62 aa8.63□□□□□ -1.03
PDPN-210ENST00000513143 K7EMI3 77 aa8.63□□□□□ -1.03
PDPN-210ENST00000513143 TCAPO15273 167 aa8.63□□□□□ -1.03
PDPN-210ENST00000513143 XP32Q5T750 250 aa8.63□□□□□ -1.03
PDPN-210ENST00000513143 DEFB104AQ8WTQ1 72 aa8.63□□□□□ -1.03
PDPN-210ENST00000513143 TENM2Q9NT68 2774 aa8.63□□□□□ -1.03
PDPN-210ENST00000513143 LINC00614P0C842 121 aa8.62□□□□□ -1.03
PDPN-210ENST00000513143 FCER1GP30273 86 aa8.62□□□□□ -1.03
PDPN-210ENST00000513143 LELP1Q5T871 98 aa8.62□□□□□ -1.03
PDPN-210ENST00000513143 NIT1Q86X76 327 aa8.62□□□□□ -1.03
PDPN-210ENST00000513143 URB1-AS1Q96HZ7 61 aa8.62□□□□□ -1.03
PDPN-210ENST00000513143 TRBV25-1A0A075B6N4 114 aa8.61□□□□□ -1.03
PDPN-210ENST00000513143 IGHV1-24A0A0C4DH33 117 aa8.61□□□□□ -1.03
PDPN-210ENST00000513143 CCL18P55774 89 aa8.61□□□□□ -1.03
PDPN-210ENST00000513143 RAB5BP61020 215 aa8.61□□□□□ -1.03
PDPN-210ENST00000513143 FA2HQ7L5A8 372 aa8.61□□□□□ -1.03
PDPN-210ENST00000513143 ESDP10768 282 aa8.6□□□□□ -1.03
PDPN-210ENST00000513143 AMTP48728 403 aa8.6□□□□□ -1.03
PDPN-210ENST00000513143 LAGE3Q14657 143 aa8.6□□□□□ -1.03
PDPN-210ENST00000513143 BAGE3Q86Y29 109 aa8.6□□□□□ -1.03
PDPN-210ENST00000513143 CHCHD7Q9BUK0 85 aa8.6□□□□□ -1.03
PDPN-210ENST00000513143 LINC00588Q9Y4M8 146 aa8.6□□□□□ -1.03
PDPN-210ENST00000513143 ORMDL2Q53FV1 153 aa8.59□□□□□ -1.03
PDPN-210ENST00000513143 CHCHD1Q96BP2 118 aaKnown RBP8.59□□□□□ -1.03
PDPN-210ENST00000513143 TMEM243Q9BU79 118 aa8.59□□□□□ -1.03
PDPN-210ENST00000513143 AP5S1Q9NUS5 200 aa8.59□□□□□ -1.03
PDPN-210ENST00000513143 MRPS16Q9Y3D3 137 aaKnown RBP8.59□□□□□ -1.03
PDPN-210ENST00000513143 SERF1AO75920 110 aa8.58□□□□□ -1.04
PDPN-210ENST00000513143 LINC00310P59036 64 aa8.58□□□□□ -1.04
PDPN-210ENST00000513143 RNASEKQ6P5S7 137 aaKnown RBP8.58□□□□□ -1.04
PDPN-210ENST00000513143 C20orf203Q8NBC4 194 aa8.58□□□□□ -1.04
PDPN-210ENST00000513143 UPK3BQ9BT76 320 aa8.58□□□□□ -1.04
PDPN-210ENST00000513143 TRAV8-6A0A0B4J262 113 aa8.57□□□□□ -1.04
PDPN-210ENST00000513143 H7C423 109 aa8.57□□□□□ -1.04
PDPN-210ENST00000513143 COA6Q5JTJ3 125 aaKnown RBP8.57□□□□□ -1.04
PDPN-210ENST00000513143 CHCHD5Q9BSY4 110 aa8.57□□□□□ -1.04
PDPN-210ENST00000513143 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.56□□□□□ -1.04
PDPN-210ENST00000513143 IGKV2-29A2NJV5 120 aaPredicted RBP8.56□□□□□ -1.04
PDPN-210ENST00000513143 NUPR1O60356 82 aa8.56□□□□□ -1.04
PDPN-210ENST00000513143 G0S2P27469 103 aa8.56□□□□□ -1.04
PDPN-210ENST00000513143 NDUFA6P56556 154 aa8.56□□□□□ -1.04
PDPN-210ENST00000513143 WFDC10BQ8IUB3 73 aa8.56□□□□□ -1.04
PDPN-210ENST00000513143 TMEM18Q96B42 140 aa8.56□□□□□ -1.04
PDPN-210ENST00000513143 UBE2L6O14933 153 aa8.55□□□□□ -1.04
PDPN-210ENST00000513143 HSBP1O75506 76 aa8.55□□□□□ -1.04
PDPN-210ENST00000513143 C2orf66Q6UXQ4 117 aa8.55□□□□□ -1.04
PDPN-210ENST00000513143 UBE2DNLQ8IWF7 75 aa8.55□□□□□ -1.04
PDPN-210ENST00000513143 A0A096LNJ9 63 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 TMEM262E9PQX1 116 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 BTF3P20290 206 aaKnown RBP8.54□□□□□ -1.04
PDPN-210ENST00000513143 PKIAP61925 76 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 RPL39P62891 51 aaKnown RBP8.54□□□□□ -1.04
PDPN-210ENST00000513143 GAGE6Q13070 117 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 LGALS9CQ6DKI2 356 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 MRPL52Q86TS9 123 aaKnown RBP8.54□□□□□ -1.04
PDPN-210ENST00000513143 TOMM6Q96B49 74 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 CYSLTR1Q9Y271 337 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 VPS13DQ5THJ4 4388 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 A0A1B0GUV1 79 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 SIVA1O15304 175 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 HBDP02042 147 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 DNAH10OSP0CZ25 163 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 PMCHL1Q16048 86 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 TIMM21Q9BVV7 248 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 Q9H8V8 135 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 UBE2D4Q9Y2X8 147 aa8.54□□□□□ -1.04
PDPN-210ENST00000513143 LINC01549A6NIU2 74 aa8.53□□□□□ -1.04
PDPN-210ENST00000513143 FGF6P10767 208 aa8.53□□□□□ -1.04
PDPN-210ENST00000513143 ZNF25P17030 456 aaPredicted RBP8.53□□□□□ -1.04
PDPN-210ENST00000513143 SMAGPQ0VAQ4 97 aa8.53□□□□□ -1.04
PDPN-210ENST00000513143 MPV17L2Q567V2 206 aa8.53□□□□□ -1.04
PDPN-210ENST00000513143 LINC01556Q5JQF7 62 aa8.53□□□□□ -1.04
PDPN-210ENST00000513143 FAM19A2Q8N3H0 131 aa8.53□□□□□ -1.04
PDPN-210ENST00000513143 PYGO1Q9Y3Y4 419 aa8.53□□□□□ -1.04
PDPN-210ENST00000513143 CSDC2Q9Y534 153 aaKnown RBP8.53□□□□□ -1.04
PDPN-210ENST00000513143 LYSTQ99698 3801 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 A0A087WX48 190 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 IGIPA6NJ69 53 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 RBX1P62877 108 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 PDZD11Q5EBL8 140 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 AMMECR1LQ6DCA0 310 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 Q8N3U1 123 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 LINC00476Q8WZB0 136 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 SPANXA1Q9NS26 97 aa8.52□□□□□ -1.05
PDPN-210ENST00000513143 DNAH1Q9P2D7 4330 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms