RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NXPH4O95158 308 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 IGIPA6NJ69 53 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 K7EQD1 137 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 ACYP1P07311 99 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 RNF183Q96D59 192 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 SORL1Q92673 2214 aa6.27□□□□□ -1.41
LIMCH1-216ENST00000512820 C2CD3Q4AC94 2353 aa6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 TEX49A0A1B0GTD5 131 aa6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 TINCRA0A1B0GVN0 87 aa6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 C10orf99Q6UWK7 81 aa6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 LAMTOR3Q9UHA4 124 aa6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 TSHBP01222 138 aa6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 DAZ2Q13117 558 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 DAZ4Q86SG3 579 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 DAZ3Q9NR90 486 aaKnown RBP6.26□□□□□ -1.41
LIMCH1-216ENST00000512820 CRYGDP07320 174 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 PROK1P58294 105 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 CCL24O00175 119 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 TRIAP1O43715 76 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 C5orf38Q86SI9 138 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 SPANXDQ9BXN6 97 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 LINC00467Q9BRT7 94 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 CDKN2A-AS1Q9UH64 79 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 SND1-IT1Q9HBX3 110 aa6.25□□□□□ -1.41
LIMCH1-216ENST00000512820 UBE2D1P51668 147 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 DCANP1Q8TF63 244 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 C9orf85Q96MD7 179 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 GHRHP01286 108 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 WNK1Q9H4A3 2382 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 IGLV4-69A0A075B6H9 119 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 RS1O15537 224 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 MAP6D1Q9H9H5 199 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 LINC01546A6NGU7 62 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 XGP55808 180 aa6.24□□□□□ -1.41
LIMCH1-216ENST00000512820 TRBV30A0A0K0K1B3 111 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 A0A1W2PPR1 153 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 A8MZ25 164 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 IGLV1-40P01703 118 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 XCL1P47992 114 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 CLPSL2Q6UWE3 100 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 A0A096LPF7 62 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 EDN2P20800 178 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 PSMB8P28062 276 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 COX7B2Q8TF08 81 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 PYGO1Q9Y3Y4 419 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 NCOR2Q9Y618 2525 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 FAM236AA0A1B0GUQ0 79 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 FAM236BA0A1B0GV22 79 aa6.23□□□□□ -1.41
LIMCH1-216ENST00000512820 NDUFV3P56181 108 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-216ENST00000512820 TSPEAR-AS2P59090 65 aa6.22□□□□□ -1.41
LIMCH1-216ENST00000512820 TMEM263Q8WUH6 116 aaKnown RBP6.22□□□□□ -1.41
LIMCH1-216ENST00000512820 C4orf3Q8WVX3 66 aa6.22□□□□□ -1.41
LIMCH1-216ENST00000512820 MIR7-3HGQ8N6C7 128 aa6.21□□□□□ -1.41
LIMCH1-216ENST00000512820 C16orf74Q96GX8 76 aa6.21□□□□□ -1.41
LIMCH1-216ENST00000512820 H0YGX0 51 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 CRIP2P52943 208 aaPredicted RBP6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 UBE2D3P61077 147 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 UBE2D2P62837 147 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 SMIM20Q8N5G0 67 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 PTPN13Q12923 2485 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 TRBV10-1A0A0K0K1A3 114 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 COX7A2LO14548 114 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 PRM2P04554 102 aa6.21□□□□□ -1.42
LIMCH1-216ENST00000512820 LINC00308Q8TCZ7 52 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 TRAV4A0A0B4J268 109 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 DEFB113Q30KQ7 82 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 Q6ZTI0 123 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 CDH23Q9H251 3354 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 TRAV25A0A0B4J276 109 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 UBL5Q9BZL1 73 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 ORMDL1Q9P0S3 153 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 Q9HAA7 133 aa6.2□□□□□ -1.42
LIMCH1-216ENST00000512820 F5H768 121 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 NDUFA1O15239 70 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 CRLF1O75462 422 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 ANGP03950 147 aaKnown RBP6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 TIRAPP58753 221 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 C3orf56Q8N813 242 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 SPANXCQ9NY87 97 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 DAD1P61803 113 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 ANKRD11Q6UB99 2663 aaPredicted RBP6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 DEFB114Q30KQ6 69 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 Q6YL49 198 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 MRPS36P82909 103 aaKnown RBP6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 UBE2D4Q9Y2X8 147 aa6.19□□□□□ -1.42
LIMCH1-216ENST00000512820 IGKV3D-7A0A0C4DH55 119 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 LECT2O14960 151 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 GYPEP15421 78 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 NAV2Q8IVL1 2488 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 MYO9AB2RTY4 2548 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 AVPP01185 164 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 PTPRBP23467 1997 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 TRACP01848 142 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 HIST2H2BCQ6DN03 193 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 HIST2H2BDQ6DRA6 164 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 LINC00643Q86TS7 51 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 PRORYQ9H606 182 aa6.18□□□□□ -1.42
LIMCH1-216ENST00000512820 TIMM17BO60830 172 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 PRB1P04280 392 aa6.17□□□□□ -1.42
LIMCH1-216ENST00000512820 KIF25-AS1Q9Y6Z4 181 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms