RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 CCDC140Q96MF4 163 aa6.64□□□□□ -1.35
VCAN-208ENST00000512590 COL11A2P13942 1736 aaPredicted RBP6.64□□□□□ -1.35
VCAN-208ENST00000512590 ANKRD36A6QL64 1941 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 PROK1P58294 105 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 LMO4P61968 165 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 ZNF702PQ9H963 129 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 PROK2Q9HC23 129 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 ADAMTSL1Q8N6G6 1762 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 PLXNA1Q9UIW2 1896 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 SBF2Q86WG5 1849 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 RBX1P62877 108 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 IBA57-AS1B1ANH7 110 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 E7EUB6 86 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 MRGPRG-AS1Q2M3A8 158 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 C6orf99Q4VX62 202 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 C20orf203Q8NBC4 194 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 MUC7Q8TAX7 377 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 LINC00467Q9BRT7 94 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 COL4A5P29400 1685 aa6.63□□□□□ -1.35
VCAN-208ENST00000512590 FOCADQ5VW36 1801 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 PIK3CD-AS1Q5SR53 167 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 TYMSOSQ8TAI1 123 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 Q9BRP9 147 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 FER1L5A0AVI2 2057 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 Q6JHZ5 121 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 ODF3Q96PU9 254 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 WNK3Q9BYP7 1800 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 CACNA1EQ15878 2313 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 ENHOQ6UWT2 76 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 CEP250Q9BV73 2442 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 MSMPQ1L6U9 139 aa6.62□□□□□ -1.35
VCAN-208ENST00000512590 ZFC3H1O60293 1989 aaKnown RBP6.62□□□□□ -1.35
VCAN-208ENST00000512590 PSMG3-AS1Q96PY0 264 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 TRBV30A0A0K0K1B3 111 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 J3KT08 172 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 Q6ZTC4 211 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 IGLC6P0CF74 106 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 KIAA1217Q5T5P2 1943 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 TRPM7Q96QT4 1865 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 RPL37AP61513 92 aaKnown RBP6.61□□□□□ -1.35
VCAN-208ENST00000512590 CFAP126Q5VTH2 177 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 NEXN-AS1Q8NBZ9 246 aa6.61□□□□□ -1.35
VCAN-208ENST00000512590 SBSPONQ8IVN8 264 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 POM121L12Q8N7R1 296 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 K7EQG2 157 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 ACACAQ13085 2346 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 NDUFS6O75380 124 aaKnown RBP6.6□□□□□ -1.35
VCAN-208ENST00000512590 NRXN2Q9P2S2 1712 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 HIVEP2P31629 2446 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 NDUFC2-KCTD14E9PQ53 114 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 Q6ZQY7 126 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 FAM19A3Q7Z5A8 133 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 XIRP1Q702N8 1843 aaKnown RBP6.6□□□□□ -1.35
VCAN-208ENST00000512590 PATE2Q6UY27 113 aa6.6□□□□□ -1.35
VCAN-208ENST00000512590 M0R2T5 61 aa6.59□□□□□ -1.35
VCAN-208ENST00000512590 ZNF73O43830 326 aaPredicted RBP6.59□□□□□ -1.35
VCAN-208ENST00000512590 PCOTHQ58A44 107 aa6.59□□□□□ -1.35
VCAN-208ENST00000512590 POLR3KQ9Y2Y1 108 aaPredicted RBP6.59□□□□□ -1.35
VCAN-208ENST00000512590 COX6A2Q02221 97 aa6.59□□□□□ -1.35
VCAN-208ENST00000512590 MBD6Q96DN6 1003 aa6.58□□□□□ -1.36
VCAN-208ENST00000512590 RNASE3P12724 160 aaKnown RBP6.58□□□□□ -1.36
VCAN-208ENST00000512590 CACNA1DQ01668 2161 aa6.58□□□□□ -1.36
VCAN-208ENST00000512590 FNDC1Q4ZHG4 1894 aaPredicted RBP6.58□□□□□ -1.36
VCAN-208ENST00000512590 KIAA1671Q9BY89 1806 aa6.58□□□□□ -1.36
VCAN-208ENST00000512590 TRBV27A0A0K0K1C4 114 aa6.58□□□□□ -1.36
VCAN-208ENST00000512590 MYOFQ9NZM1 2061 aa6.58□□□□□ -1.36
VCAN-208ENST00000512590 DOCK5Q9H7D0 1870 aa6.58□□□□□ -1.36
VCAN-208ENST00000512590 GREB1LQ9C091 1923 aaPredicted RBP6.58□□□□□ -1.36
VCAN-208ENST00000512590 COL11A1P12107 1806 aaPredicted RBP6.58□□□□□ -1.36
VCAN-208ENST00000512590 LRRK1Q38SD2 2015 aa6.58□□□□□ -1.36
VCAN-208ENST00000512590 PYY3Q5JQD4 70 aa6.57□□□□□ -1.36
VCAN-208ENST00000512590 C11orf53Q8IXP5 236 aa6.57□□□□□ -1.36
VCAN-208ENST00000512590 RBBP6Q7Z6E9 1792 aaKnown RBP6.57□□□□□ -1.36
VCAN-208ENST00000512590 K7EP13 123 aa6.57□□□□□ -1.36
VCAN-208ENST00000512590 PYGO1Q9Y3Y4 419 aa6.57□□□□□ -1.36
VCAN-208ENST00000512590 CRYGAP11844 174 aa6.57□□□□□ -1.36
VCAN-208ENST00000512590 EIF4EBP1Q13541 118 aaPredicted RBP6.57□□□□□ -1.36
VCAN-208ENST00000512590 C10orf99Q6UWK7 81 aa6.57□□□□□ -1.36
VCAN-208ENST00000512590 NUP214P35658 2090 aaPredicted RBP6.56□□□□□ -1.36
VCAN-208ENST00000512590 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.56□□□□□ -1.364e-13■■■■□ 26.6
VCAN-208ENST00000512590 TNRC6BQ9UPQ9 1833 aaKnown RBP6.56□□□□□ -1.36
VCAN-208ENST00000512590 ATP5EP2Q5VTU8 51 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 C18orf65Q6ZTR6 163 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 KIF26BQ2KJY2 2108 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 CEP290O15078 2479 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 PLCE1Q9P212 2302 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 LINC00959A0A1B0GUT2 108 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 H3BT86 120 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 RNASE8Q8TDE3 154 aaKnown RBP6.56□□□□□ -1.36
VCAN-208ENST00000512590 LRRC37A2A6NM11 1700 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 B5MCH6 92 aa6.56□□□□□ -1.36
VCAN-208ENST00000512590 PDCD11Q14690 1871 aaKnown RBP6.55□□□□□ -1.36
VCAN-208ENST00000512590 A0A0U1RQV1 116 aa6.55□□□□□ -1.36
VCAN-208ENST00000512590 LINC00575Q6W349 94 aa6.55□□□□□ -1.36
VCAN-208ENST00000512590 SDIM1Q6ZPB5 146 aa6.55□□□□□ -1.36
VCAN-208ENST00000512590 NRACQ8N912 160 aa6.55□□□□□ -1.36
VCAN-208ENST00000512590 LINC00208Q96KT6 92 aa6.55□□□□□ -1.36
VCAN-208ENST00000512590 TRBV6-5A0A0K0K1A5 114 aa6.55□□□□□ -1.36
VCAN-208ENST00000512590 CYSRT1A8MQ03 144 aa6.54□□□□□ -1.36
VCAN-208ENST00000512590 E9PLD3 99 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms