RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 SPINK8P0C7L1 97 aa6.7□□□□□ -1.34
PDGFRA-208ENST00000509490 CSDC2Q9Y534 153 aaKnown RBP6.7□□□□□ -1.34
PDGFRA-208ENST00000509490 TNFRSF18Q9Y5U5 241 aa6.7□□□□□ -1.34
PDGFRA-208ENST00000509490 CSMD1Q96PZ7 3565 aa6.7□□□□□ -1.34
PDGFRA-208ENST00000509490 IGLV5-39A0A0G2JS06 123 aa6.7□□□□□ -1.34
PDGFRA-208ENST00000509490 NDUFA1O15239 70 aa6.7□□□□□ -1.34
PDGFRA-208ENST00000509490 CKS1BP61024 79 aa6.7□□□□□ -1.34
PDGFRA-208ENST00000509490 MT-ATP8P03928 68 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 PEMTQ9UBM1 199 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 FAM240AA0A1B0GVK7 77 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 C4orf3Q8WVX3 66 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 NDUFA12Q9UI09 145 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 NACAE9PAV3 2078 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 SPTBN1Q01082 2364 aaKnown RBP6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 TRAV25A0A0B4J276 109 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 TRIAP1O43715 76 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 TMEM61Q8N0U2 210 aa6.69□□□□□ -1.34
PDGFRA-208ENST00000509490 C9JAW5 83 aa6.68□□□□□ -1.34
PDGFRA-208ENST00000509490 IGF2RP11717 2491 aa6.68□□□□□ -1.34
PDGFRA-208ENST00000509490 MED13LQ71F56 2210 aa6.68□□□□□ -1.34
PDGFRA-208ENST00000509490 IGKV3-20P01619 116 aa6.68□□□□□ -1.34
PDGFRA-208ENST00000509490 ADAMTSL4-AS1Q5T5F5 129 aa6.68□□□□□ -1.34
PDGFRA-208ENST00000509490 ICOSQ9Y6W8 199 aa6.68□□□□□ -1.34
PDGFRA-208ENST00000509490 DEFB131AP59861 70 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 Q6ZSN1 163 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 TMEM86BQ8N661 226 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 MAP6D1Q9H9H5 199 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 TRBV10-1A0A0K0K1A3 114 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 A0A1W2PRX2 142 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 LST1O00453 97 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 RAX2Q96IS3 184 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 DUX5Q96PT3 197 aa6.67□□□□□ -1.34
PDGFRA-208ENST00000509490 KNCNA6PVL3 124 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 COPS9Q8WXC6 57 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 DUX3Q96PT4 197 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 GEMIN7Q9H840 131 aaKnown RBP6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 INSP01308 110 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 SFTA2Q6UW10 78 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 LRRC75A-AS1Q8N1F1 130 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 ATRXP46100 2492 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 RELNP78509 3460 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 COX6CP09669 75 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 IGHV4-31P0DP07 118 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 PROK1P58294 105 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 HERVK_113P63121 156 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 C4orf48Q5BLP8 95 aa6.66□□□□□ -1.34
PDGFRA-208ENST00000509490 TRAV8-3A0A0A6YYJ7 113 aa6.65□□□□□ -1.34
PDGFRA-208ENST00000509490 DEFB114Q30KQ6 69 aa6.65□□□□□ -1.34
PDGFRA-208ENST00000509490 DOPEY2Q9Y3R5 2298 aa6.65□□□□□ -1.34
PDGFRA-208ENST00000509490 DEFB104AQ8WTQ1 72 aa6.65□□□□□ -1.35
PDGFRA-208ENST00000509490 COL6A6A6NMZ7 2263 aa6.64□□□□□ -1.35
PDGFRA-208ENST00000509490 H7C423 109 aa6.64□□□□□ -1.35
PDGFRA-208ENST00000509490 TMEM101Q96IK0 257 aa6.64□□□□□ -1.35
PDGFRA-208ENST00000509490 PRRC2AP48634 2157 aaKnown RBP6.64□□□□□ -1.35
PDGFRA-208ENST00000509490 SLURP1P55000 103 aa6.64□□□□□ -1.35
PDGFRA-208ENST00000509490 NTN5Q8WTR8 489 aaPredicted RBP6.64□□□□□ -1.35
PDGFRA-208ENST00000509490 UBE2WQ96B02 151 aa6.64□□□□□ -1.35
PDGFRA-208ENST00000509490 IGHV3-64A0A075B6Q5 118 aa6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 BEX4Q9NWD9 120 aaPredicted RBP6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 IGHV3OR16-12A0A075B7B8 117 aa6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 DAZ2Q13117 558 aaKnown RBP6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 CEMP1Q6PRD7 247 aaPredicted RBP6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 DAZ4Q86SG3 579 aaKnown RBP6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 DAZ3Q9NR90 486 aaKnown RBP6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 HERV-K104P63124 156 aa6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 CIRBPQ14011 172 aaKnown RBP6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 LINC00242Q5T6M2 205 aa6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 ZNF625Q96I27 306 aaPredicted RBP6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 CDKN2A-AS1Q9UH64 79 aa6.63□□□□□ -1.35
PDGFRA-208ENST00000509490 TRAV4A0A0B4J268 109 aa6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 Q1RN00 199 aa6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 TEX29Q8N6K0 151 aa6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 FAM110AQ9BQ89 295 aa6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 Q9UF83 564 aa6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 IGKV2-29A2NJV5 120 aaPredicted RBP6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 F8WDY8 70 aa6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 LINC00308Q8TCZ7 52 aa6.62□□□□□ -1.35
PDGFRA-208ENST00000509490 TRAV8-4A0A0B4J246 113 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 F5H768 121 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 CMC4P56277 68 aaPredicted RBP6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 C2orf82Q6UX34 121 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 LINC01587Q99440 93 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 ITPR1Q14643 2758 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 CR1P17927 2039 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 IGHV3-73A0A0B4J1V6 119 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 SMIM1B2RUZ4 78 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 ACYP1P07311 99 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 C1orf158Q8N1D5 194 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 DOPEY1Q5JWR5 2465 aa6.61□□□□□ -1.35
PDGFRA-208ENST00000509490 ADARB2-AS1A8MUL3 147 aa6.6□□□□□ -1.35
PDGFRA-208ENST00000509490 COX7A2LO14548 114 aa6.6□□□□□ -1.35
PDGFRA-208ENST00000509490 ODF3L2Q3SX64 289 aa6.6□□□□□ -1.35
PDGFRA-208ENST00000509490 FAM222AQ5U5X8 452 aa6.6□□□□□ -1.35
PDGFRA-208ENST00000509490 SDIM1Q6ZPB5 146 aa6.6□□□□□ -1.35
PDGFRA-208ENST00000509490 C18orf65Q6ZTR6 163 aa6.6□□□□□ -1.35
PDGFRA-208ENST00000509490 NBASA2RRP1 2371 aa6.6□□□□□ -1.35
PDGFRA-208ENST00000509490 ASH1LQ9NR48 2969 aaKnown RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms