RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 OR10AG1Q8NH19 301 aa10.58□□□□□ -0.72
VIM-208ENST00000497849 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.58□□□□□ -0.72
VIM-208ENST00000497849 HIGD1CA8MV81 97 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 PANO1I0J062 215 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 M0R381 172 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 CXCL1P09341 107 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 IGLC6P0CF74 106 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 FER1L6-AS1Q8NA97 138 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 NUP35Q8NFH5 326 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 GTSF1Q8WW33 167 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 PHLDA3Q9Y5J5 127 aa10.57□□□□□ -0.72
VIM-208ENST00000497849 SNAI2O43623 268 aa10.56□□□□□ -0.72
VIM-208ENST00000497849 GAS8-AS1O95177 125 aa10.56□□□□□ -0.72
VIM-208ENST00000497849 FOXA3P55318 350 aaPredicted RBP10.56□□□□□ -0.72
VIM-208ENST00000497849 LYZL1Q6UWQ5 148 aa10.56□□□□□ -0.72
VIM-208ENST00000497849 PGLYRP4Q96LB8 373 aa10.56□□□□□ -0.72
VIM-208ENST00000497849 SSBP4Q9BWG4 385 aaPredicted RBP10.56□□□□□ -0.72
VIM-208ENST00000497849 SAMD10Q9BYL1 202 aa10.56□□□□□ -0.72
VIM-208ENST00000497849 KLK12Q9UKR0 248 aa10.56□□□□□ -0.72
VIM-208ENST00000497849 GAGE12JA6NER3 117 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 GAGE1Q13065 139 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 GAGE4Q13068 117 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 GAGE5Q13069 117 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 GAGE13Q4V321 117 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 NIT1Q86X76 327 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 PTH2Q96A98 100 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 BORCS7Q96B45 105 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 Q9UF83 564 aa10.55□□□□□ -0.72
VIM-208ENST00000497849 OR5AL1P0C617 328 aa10.54□□□□□ -0.72
VIM-208ENST00000497849 RAB5AP20339 215 aa10.54□□□□□ -0.72
VIM-208ENST00000497849 UBE2WQ96B02 151 aa10.54□□□□□ -0.72
VIM-208ENST00000497849 LPAP08519 4548 aa10.53□□□□□ -0.72
VIM-208ENST00000497849 F2Z2F3 143 aa10.53□□□□□ -0.72
VIM-208ENST00000497849 CTRLP40313 264 aa10.53□□□□□ -0.72
VIM-208ENST00000497849 RIGQ13278 110 aa10.53□□□□□ -0.72
VIM-208ENST00000497849 C14orf177Q52M58 125 aa10.53□□□□□ -0.72
VIM-208ENST00000497849 SPANXN1Q5VSR9 72 aa10.53□□□□□ -0.72
VIM-208ENST00000497849 MRPL54Q6P161 138 aaKnown RBP10.53□□□□□ -0.72
VIM-208ENST00000497849 ZFP82Q8N141 532 aa10.53□□□□□ -0.72
VIM-208ENST00000497849 A0A087WWL8 130 aa10.52□□□□□ -0.73
VIM-208ENST00000497849 A0A1B0GUT8 65 aa10.52□□□□□ -0.73
VIM-208ENST00000497849 ATP5L2Q7Z4Y8 100 aa10.52□□□□□ -0.73
VIM-208ENST00000497849 RPS10P46783 165 aaKnown RBP10.51□□□□□ -0.73
VIM-208ENST00000497849 COX19Q49B96 90 aa10.51□□□□□ -0.73
VIM-208ENST00000497849 RASL11AQ6T310 242 aa10.51□□□□□ -0.73
VIM-208ENST00000497849 C9orf163Q8N9P6 203 aa10.51□□□□□ -0.73
VIM-208ENST00000497849 KRTAP9-2Q9BYQ4 174 aa10.51□□□□□ -0.73
VIM-208ENST00000497849 A0A1B0GW15 77 aa10.5□□□□□ -0.73
VIM-208ENST00000497849 NTF3P20783 257 aa10.5□□□□□ -0.73
VIM-208ENST00000497849 HBBP68871 147 aa10.5□□□□□ -0.73
VIM-208ENST00000497849 WDR73Q6P4I2 378 aa10.5□□□□□ -0.73
VIM-208ENST00000497849 LINC01600Q96MT4 127 aa10.5□□□□□ -0.73
VIM-208ENST00000497849 A0A1B0GXF2 115 aa10.49□□□□□ -0.73
VIM-208ENST00000497849 A8MWV9 139 aa10.49□□□□□ -0.73
VIM-208ENST00000497849 S100A8P05109 93 aa10.49□□□□□ -0.73
VIM-208ENST00000497849 PRSS1P07477 247 aa10.49□□□□□ -0.73
VIM-208ENST00000497849 CACNG7P62955 275 aa10.49□□□□□ -0.73
VIM-208ENST00000497849 FAM74A4Q5TZK3 123 aa10.49□□□□□ -0.73
VIM-208ENST00000497849 UFSP1Q6NVU6 142 aa10.49□□□□□ -0.73
VIM-208ENST00000497849 C14orf178Q8N769 122 aaPredicted RBP10.49□□□□□ -0.73
VIM-208ENST00000497849 USP17L23D6RBM5 183 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 CAMPP49913 170 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 RAB4BP61018 213 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 TWIST1Q15672 202 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 PIK3CD-AS1Q5SR53 167 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 SDIM1Q6ZPB5 146 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 GNB1LQ9BYB4 327 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 CNFNQ9BYD5 112 aa10.48□□□□□ -0.73
VIM-208ENST00000497849 MT-ND6P03923 174 aa10.47□□□□□ -0.73
VIM-208ENST00000497849 Q0VG73 95 aa10.47□□□□□ -0.73
VIM-208ENST00000497849 DGAT2L7PQ6IED9 249 aa10.47□□□□□ -0.73
VIM-208ENST00000497849 ZFP2Q6ZN57 461 aa10.47□□□□□ -0.73
VIM-208ENST00000497849 TMEM136Q6ZRR5 245 aa10.47□□□□□ -0.73
VIM-208ENST00000497849 C1orf43Q9BWL3 253 aa10.47□□□□□ -0.73
VIM-208ENST00000497849 KIF25-AS1Q9Y6Z4 181 aa10.47□□□□□ -0.73
VIM-208ENST00000497849 CIRBPQ14011 172 aaKnown RBP10.46□□□□□ -0.73
VIM-208ENST00000497849 ENHOQ6UWT2 76 aa10.46□□□□□ -0.73
VIM-208ENST00000497849 CHCHD7Q9BUK0 85 aa10.46□□□□□ -0.73
VIM-208ENST00000497849 DPH3P1Q9H4G8 78 aa10.46□□□□□ -0.73
VIM-208ENST00000497849 TRAPPC1Q9Y5R8 145 aa10.46□□□□□ -0.73
VIM-208ENST00000497849 A0A087WX48 190 aa10.45□□□□□ -0.74
VIM-208ENST00000497849 HLA-DQA1P01909 254 aa10.45□□□□□ -0.74
VIM-208ENST00000497849 MGPP08493 103 aa10.45□□□□□ -0.74
VIM-208ENST00000497849 C1orf196B1AJZ1 125 aa10.44□□□□□ -0.74
VIM-208ENST00000497849 F5H697 171 aa10.44□□□□□ -0.74
VIM-208ENST00000497849 TRGC2P03986 189 aa10.44□□□□□ -0.74
VIM-208ENST00000497849 FABP9Q0Z7S8 132 aa10.44□□□□□ -0.74
VIM-208ENST00000497849 SMIM15Q7Z3B0 74 aa10.44□□□□□ -0.74
VIM-208ENST00000497849 GATD1Q8NB37 220 aa10.44□□□□□ -0.74
VIM-208ENST00000497849 AP1S3Q96PC3 154 aa10.44□□□□□ -0.74
VIM-208ENST00000497849 MRPL18Q9H0U6 180 aaKnown RBP10.44□□□□□ -0.74
VIM-208ENST00000497849 RHODO00212 210 aa10.43□□□□□ -0.74
VIM-208ENST00000497849 APCSP02743 223 aa10.43□□□□□ -0.74
VIM-208ENST00000497849 TRGC1P0CF51 173 aa10.43□□□□□ -0.74
VIM-208ENST00000497849 SMIM17P0DL12 118 aa10.43□□□□□ -0.74
VIM-208ENST00000497849 ZNF56Q15929 161 aa10.43□□□□□ -0.74
VIM-208ENST00000497849 KRTAP10-8P60410 259 aa10.42□□□□□ -0.74
VIM-208ENST00000497849 TMEM191AQ9H0A3 160 aa10.42□□□□□ -0.74
VIM-208ENST00000497849 MUC2Q02817 5179 aa10.42□□□□□ -0.74
VIM-208ENST00000497849 A0A0J9YXV3 536 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms