RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 TMEM243Q9BU79 118 aa11.63□□□□□ -0.55
HDAC6-235ENST00000495515 VPS13DQ5THJ4 4388 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 TRBV27A0A0K0K1C4 114 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 IGHV3-30P01768 117 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 IGHV3-33P01772 117 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 APCSP02743 223 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 IGHV3-30-3P0DP02 117 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 IGHV3-30-5P0DP03 117 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 ELOBQ15370 118 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 C1orf134Q5TEV5 83 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 KIR2DL4Q99706 377 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 SMCO4Q9NRQ5 59 aa11.62□□□□□ -0.55
HDAC6-235ENST00000495515 UBE2L6O14933 153 aa11.61□□□□□ -0.55
HDAC6-235ENST00000495515 RPL32P62910 135 aaKnown RBP11.61□□□□□ -0.55
HDAC6-235ENST00000495515 ATRAIDQ6UW56 229 aa11.61□□□□□ -0.55
HDAC6-235ENST00000495515 C6orf223Q8N319 242 aa11.61□□□□□ -0.55
HDAC6-235ENST00000495515 BIRC6Q9NR09 4857 aa11.6□□□□□ -0.55
HDAC6-235ENST00000495515 TGIF2-C20orf24A0A0A6YYL0 155 aa11.6□□□□□ -0.55
HDAC6-235ENST00000495515 TCAPO15273 167 aa11.6□□□□□ -0.55
HDAC6-235ENST00000495515 FCER1GP30273 86 aa11.6□□□□□ -0.55
HDAC6-235ENST00000495515 KRTAP1-5Q9BYS1 174 aa11.6□□□□□ -0.55
HDAC6-235ENST00000495515 NPYP01303 97 aa11.59□□□□□ -0.55
HDAC6-235ENST00000495515 NFE4Q86UQ8 179 aa11.59□□□□□ -0.55
HDAC6-235ENST00000495515 DEFB104AQ8WTQ1 72 aa11.59□□□□□ -0.55
HDAC6-235ENST00000495515 IBA57-AS1B1ANH7 110 aa11.58□□□□□ -0.56
HDAC6-235ENST00000495515 H7C423 109 aa11.58□□□□□ -0.56
HDAC6-235ENST00000495515 GAGE6Q13070 117 aa11.58□□□□□ -0.56
HDAC6-235ENST00000495515 LAGE3Q14657 143 aa11.58□□□□□ -0.56
HDAC6-235ENST00000495515 SMIM2Q9BVW6 85 aa11.58□□□□□ -0.56
HDAC6-235ENST00000495515 MAP1LC3AQ9H492 121 aa11.58□□□□□ -0.56
HDAC6-235ENST00000495515 TSHBP01222 138 aa11.57□□□□□ -0.56
HDAC6-235ENST00000495515 FABP9Q0Z7S8 132 aa11.56□□□□□ -0.56
HDAC6-235ENST00000495515 MPV17L2Q567V2 206 aa11.56□□□□□ -0.56
HDAC6-235ENST00000495515 LINC00336Q6ZUF6 198 aa11.56□□□□□ -0.56
HDAC6-235ENST00000495515 MRPL18Q9H0U6 180 aaKnown RBP11.56□□□□□ -0.56
HDAC6-235ENST00000495515 TRAV8-3A0A0A6YYJ7 113 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 PRSS47A8MTI9 375 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 RBX1P62877 108 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 SMAGPQ0VAQ4 97 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 KIAA1644Q3SXP7 199 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 AMMECR1LQ6DCA0 310 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 CBLN2Q8IUK8 224 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 Q8N3U1 123 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 KLK12Q9UKR0 248 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 TRAPPC1Q9Y5R8 145 aa11.55□□□□□ -0.56
HDAC6-235ENST00000495515 KMT2AQ03164 3969 aa11.54□□□□□ -0.56
HDAC6-235ENST00000495515 A0A1B0GUV1 79 aa11.54□□□□□ -0.56
HDAC6-235ENST00000495515 ANGP03950 147 aaKnown RBP11.54□□□□□ -0.56
HDAC6-235ENST00000495515 ESDP10768 282 aa11.54□□□□□ -0.56
HDAC6-235ENST00000495515 RAB5AP20339 215 aa11.54□□□□□ -0.56
HDAC6-235ENST00000495515 TMEM18Q96B42 140 aa11.54□□□□□ -0.56
HDAC6-235ENST00000495515 YPEL4Q96NS1 127 aa11.54□□□□□ -0.56
HDAC6-235ENST00000495515 LOC389332A0A1B0GUA5 103 aa11.53□□□□□ -0.56
HDAC6-235ENST00000495515 CRPP02741 224 aa11.53□□□□□ -0.56
HDAC6-235ENST00000495515 Q0VG73 95 aa11.53□□□□□ -0.56
HDAC6-235ENST00000495515 Q8N976 141 aa11.53□□□□□ -0.56
HDAC6-235ENST00000495515 RMI2Q96E14 147 aa11.53□□□□□ -0.56
HDAC6-235ENST00000495515 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-235ENST00000495515 IGKV2-29A2NJV5 120 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-235ENST00000495515 RTL8CO15255 209 aa11.52□□□□□ -0.57
HDAC6-235ENST00000495515 ZNF25P17030 456 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-235ENST00000495515 RNASEKQ6P5S7 137 aaKnown RBP11.52□□□□□ -0.57
HDAC6-235ENST00000495515 UBE2WQ96B02 151 aa11.52□□□□□ -0.57
HDAC6-235ENST00000495515 TMEM101Q96IK0 257 aa11.52□□□□□ -0.57
HDAC6-235ENST00000495515 Q9HAA7 133 aa11.52□□□□□ -0.57
HDAC6-235ENST00000495515 NXT2Q9NPJ8 142 aaKnown RBP11.52□□□□□ -0.57
HDAC6-235ENST00000495515 FGF6P10767 208 aa11.51□□□□□ -0.57
HDAC6-235ENST00000495515 Q8N8P6 123 aa11.51□□□□□ -0.57
HDAC6-235ENST00000495515 ALKBH7Q9BT30 221 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-235ENST00000495515 TM2D2Q9BX73 214 aa11.51□□□□□ -0.57
HDAC6-235ENST00000495515 DNAH6Q9C0G6 4158 aa11.51□□□□□ -0.57
HDAC6-235ENST00000495515 K7EMI3 77 aa11.5□□□□□ -0.57
HDAC6-235ENST00000495515 COX11Q9Y6N1 276 aa11.5□□□□□ -0.57
HDAC6-235ENST00000495515 PRSS29PA6NIE9 313 aa11.49□□□□□ -0.57
HDAC6-235ENST00000495515 PSCAO43653 123 aa11.49□□□□□ -0.57
HDAC6-235ENST00000495515 DGAT2L7PQ6IED9 249 aa11.49□□□□□ -0.57
HDAC6-235ENST00000495515 C20orf203Q8NBC4 194 aa11.49□□□□□ -0.57
HDAC6-235ENST00000495515 OR5A1Q8NGJ0 315 aa11.49□□□□□ -0.57
HDAC6-235ENST00000495515 S100A1P23297 94 aa11.48□□□□□ -0.57
HDAC6-235ENST00000495515 MIAQ16674 131 aa11.48□□□□□ -0.57
HDAC6-235ENST00000495515 ORMDL2Q53FV1 153 aa11.48□□□□□ -0.57
HDAC6-235ENST00000495515 MRPL52Q86TS9 123 aaKnown RBP11.48□□□□□ -0.57
HDAC6-235ENST00000495515 LINC00269Q8N2A0 174 aa11.48□□□□□ -0.57
HDAC6-235ENST00000495515 PRSS3P2Q8NHM4 247 aa11.48□□□□□ -0.57
HDAC6-235ENST00000495515 IGLV4-60A0A075B6I1 120 aa11.47□□□□□ -0.57
HDAC6-235ENST00000495515 G0S2P27469 103 aa11.47□□□□□ -0.57
HDAC6-235ENST00000495515 REG3AQ06141 175 aa11.47□□□□□ -0.57
HDAC6-235ENST00000495515 Q6ZRN7 208 aaPredicted RBP11.47□□□□□ -0.57
HDAC6-235ENST00000495515 PRR34Q9NV39 138 aa11.47□□□□□ -0.57
HDAC6-235ENST00000495515 IGKV2D-24A0A075B6R9 120 aa11.46□□□□□ -0.57
HDAC6-235ENST00000495515 IFI27P40305 119 aaPredicted RBP11.46□□□□□ -0.57
HDAC6-235ENST00000495515 ENHOQ6UWT2 76 aa11.46□□□□□ -0.57
HDAC6-235ENST00000495515 TIMM21Q9BVV7 248 aa11.46□□□□□ -0.57
HDAC6-235ENST00000495515 C1orf43Q9BWL3 253 aa11.46□□□□□ -0.57
HDAC6-235ENST00000495515 CSDC2Q9Y534 153 aaKnown RBP11.46□□□□□ -0.57
HDAC6-235ENST00000495515 TRAV8-4A0A0B4J246 113 aa11.44□□□□□ -0.58
HDAC6-235ENST00000495515 EREGO14944 169 aa11.44□□□□□ -0.58
HDAC6-235ENST00000495515 CLPSL2Q6UWE3 100 aa11.44□□□□□ -0.58
HDAC6-235ENST00000495515 FA2HQ7L5A8 372 aa11.44□□□□□ -0.58
HDAC6-235ENST00000495515 SPANXA1Q9NS26 97 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 152.8 ms