RNA–Protein interactions for RNA: ENST00000494893.5

SNX17-209, Transcript of sorting nexin 17, human

TSL 2

Gene SNX17, Length 966 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNX17-209	ENST00000494893	C18orf32	Q8TCD1	76 aa		11.65	□□□□□ -0.54
SNX17-209	ENST00000494893		Q0VG73	95 aa		11.64	□□□□□ -0.55
SNX17-209	ENST00000494893	TTC32	Q5I0X7	151 aa		11.64	□□□□□ -0.55
SNX17-209	ENST00000494893	OR10J3	Q5JRS4	329 aa		11.64	□□□□□ -0.55
SNX17-209	ENST00000494893	C6orf223	Q8N319	242 aa		11.64	□□□□□ -0.55
SNX17-209	ENST00000494893	RPL39L	Q96EH5	51 aa	Known RBP	11.64	□□□□□ -0.55
SNX17-209	ENST00000494893	NIT2	Q9NQR4	276 aa		11.64	□□□□□ -0.55
SNX17-209	ENST00000494893	TRBV6-5	A0A0K0K1A5	114 aa		11.63	□□□□□ -0.55
SNX17-209	ENST00000494893	C20orf78	Q9BR46	151 aa		11.63	□□□□□ -0.55
SNX17-209	ENST00000494893	GTSF1L	Q9H1H1	148 aa		11.63	□□□□□ -0.55
SNX17-209	ENST00000494893	TMA7	Q9Y2S6	64 aa	Known RBP	11.63	□□□□□ -0.55
SNX17-209	ENST00000494893	PRSS29P	A6NIE9	313 aa		11.62	□□□□□ -0.55
SNX17-209	ENST00000494893	PRSS47	A8MTI9	375 aa		11.62	□□□□□ -0.55
SNX17-209	ENST00000494893	IQCJ	Q1A5X6	159 aa		11.62	□□□□□ -0.55
SNX17-209	ENST00000494893	MAP1LC3A	Q9H492	121 aa		11.62	□□□□□ -0.55
SNX17-209	ENST00000494893	DYNC1H1	Q14204	4646 aa	Known RBP	11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	TRBV10-1	A0A0K0K1A3	114 aa		11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	DNAH10OS	P0CZ25	163 aa		11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	SUMO2	P61956	95 aa	Known RBP	11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	LELP1	Q5T871	98 aa		11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	NEXN-AS1	Q8NBZ9	246 aa		11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	DNAJC30	Q96LL9	226 aa		11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	ST20	Q9HBF5	79 aa		11.61	□□□□□ -0.55
SNX17-209	ENST00000494893	NDUFA6	P56556	154 aa		11.6	□□□□□ -0.55
SNX17-209	ENST00000494893	UBE2D3	P61077	147 aa		11.6	□□□□□ -0.55
SNX17-209	ENST00000494893	UBE2D2	P62837	147 aa		11.6	□□□□□ -0.55
SNX17-209	ENST00000494893	TNP2	Q05952	138 aa		11.6	□□□□□ -0.55
SNX17-209	ENST00000494893	COA6	Q5JTJ3	125 aa	Known RBP	11.6	□□□□□ -0.55
SNX17-209	ENST00000494893		Q6ZRN7	208 aa	Predicted RBP	11.6	□□□□□ -0.55
SNX17-209	ENST00000494893	BAGE3	Q86Y29	109 aa		11.6	□□□□□ -0.55
SNX17-209	ENST00000494893	TNFRSF18	Q9Y5U5	241 aa		11.6	□□□□□ -0.55
SNX17-209	ENST00000494893	LOC389332	A0A1B0GUA5	103 aa		11.59	□□□□□ -0.55
SNX17-209	ENST00000494893	RPL32	P62910	135 aa	Known RBP	11.59	□□□□□ -0.55
SNX17-209	ENST00000494893	PKHD1	P08F94	4074 aa		11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	IGHV3-38	A0A0C4DH36	116 aa		11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	POLR2K	P53803	58 aa	Known RBP	11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	NIT1	Q86X76	327 aa		11.58	□□□□□ -0.56
SNX17-209	ENST00000494893		Q8N3U1	123 aa		11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	PRSS3P2	Q8NHM4	247 aa		11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	TMEM70	Q9BUB7	260 aa		11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	SMIM2	Q9BVW6	85 aa		11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	NXT2	Q9NPJ8	142 aa	Known RBP	11.58	□□□□□ -0.56
SNX17-209	ENST00000494893	TRBV7-3	A0A075B6L6	115 aa		11.57	□□□□□ -0.56
SNX17-209	ENST00000494893	SDHAF1	A6NFY7	115 aa		11.57	□□□□□ -0.56
SNX17-209	ENST00000494893	S100A6	P06703	90 aa		11.57	□□□□□ -0.56
SNX17-209	ENST00000494893	PMCH	P20382	165 aa		11.57	□□□□□ -0.56
SNX17-209	ENST00000494893	IFI27	P40305	119 aa	Predicted RBP	11.57	□□□□□ -0.56
SNX17-209	ENST00000494893	RPL36A	P83881	106 aa	Known RBP	11.57	□□□□□ -0.56
SNX17-209	ENST00000494893		Q8N8P6	123 aa		11.57	□□□□□ -0.56
SNX17-209	ENST00000494893	RPL36AL	Q969Q0	106 aa	Known RBP	11.57	□□□□□ -0.56
SNX17-209	ENST00000494893	TRAV8-6	A0A0B4J262	113 aa		11.56	□□□□□ -0.56
SNX17-209	ENST00000494893	VCY	O14598	125 aa		11.56	□□□□□ -0.56
SNX17-209	ENST00000494893	LINC00614	P0C842	121 aa		11.56	□□□□□ -0.56
SNX17-209	ENST00000494893	LINC01556	Q5JQF7	62 aa		11.56	□□□□□ -0.56
SNX17-209	ENST00000494893	URB1-AS1	Q96HZ7	61 aa		11.56	□□□□□ -0.56
SNX17-209	ENST00000494893	TRBV27	A0A0K0K1C4	114 aa		11.55	□□□□□ -0.56
SNX17-209	ENST00000494893	LINC01546	A6NGU7	62 aa		11.55	□□□□□ -0.56
SNX17-209	ENST00000494893	SERF1A	O75920	110 aa		11.55	□□□□□ -0.56
SNX17-209	ENST00000494893	BTF3	P20290	206 aa	Known RBP	11.55	□□□□□ -0.56
SNX17-209	ENST00000494893	LINC00310	P59036	64 aa		11.55	□□□□□ -0.56
SNX17-209	ENST00000494893	FA2H	Q7L5A8	372 aa		11.55	□□□□□ -0.56
SNX17-209	ENST00000494893	CHCHD1	Q96BP2	118 aa	Known RBP	11.55	□□□□□ -0.56
SNX17-209	ENST00000494893	RNASEK	Q6P5S7	137 aa	Known RBP	11.54	□□□□□ -0.56
SNX17-209	ENST00000494893		I3L3M4	83 aa		11.53	□□□□□ -0.56
SNX17-209	ENST00000494893	NUPR1	O60356	82 aa		11.53	□□□□□ -0.56
SNX17-209	ENST00000494893	IGHV3-30	P01768	117 aa		11.53	□□□□□ -0.56
SNX17-209	ENST00000494893	IGHV3-33	P01772	117 aa		11.53	□□□□□ -0.56
SNX17-209	ENST00000494893	IGHV3-30-3	P0DP02	117 aa		11.53	□□□□□ -0.56
SNX17-209	ENST00000494893	IGHV3-30-5	P0DP03	117 aa		11.53	□□□□□ -0.56
SNX17-209	ENST00000494893	ESD	P10768	282 aa		11.53	□□□□□ -0.56
SNX17-209	ENST00000494893	TRAV9-2	A0A087WT02	112 aa		11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	C5orf52	A6NGY3	159 aa		11.52	□□□□□ -0.57
SNX17-209	ENST00000494893		K7EMI3	77 aa		11.52	□□□□□ -0.57
SNX17-209	ENST00000494893		K7EP13	123 aa		11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	SNRPE	P62304	92 aa	Known RBP	11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	NTM-AS1	Q6ZSK4	140 aa		11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	DAZ4	Q86SG3	579 aa	Known RBP	11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	KIR2DL4	Q99706	377 aa		11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	DAZ3	Q9NR90	486 aa	Known RBP	11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	AP5S1	Q9NUS5	200 aa		11.52	□□□□□ -0.57
SNX17-209	ENST00000494893	IBA57-AS1	B1ANH7	110 aa		11.51	□□□□□ -0.57
SNX17-209	ENST00000494893	TCAP	O15273	167 aa		11.5	□□□□□ -0.57
SNX17-209	ENST00000494893	HSBP1	O75506	76 aa		11.5	□□□□□ -0.57
SNX17-209	ENST00000494893	LAGE3	Q14657	143 aa		11.5	□□□□□ -0.57
SNX17-209	ENST00000494893	C10orf126	Q8N4M7	172 aa		11.5	□□□□□ -0.57
SNX17-209	ENST00000494893	TRBV6-8	A0A0A6YYG3	113 aa		11.49	□□□□□ -0.57
SNX17-209	ENST00000494893	TSHB	P01222	138 aa		11.49	□□□□□ -0.57
SNX17-209	ENST00000494893	FCER1G	P30273	86 aa		11.48	□□□□□ -0.57
SNX17-209	ENST00000494893	ORMDL2	Q53FV1	153 aa		11.48	□□□□□ -0.57
SNX17-209	ENST00000494893	HIST3H2BB	Q8N257	126 aa		11.48	□□□□□ -0.57
SNX17-209	ENST00000494893	DEFB104A	Q8WTQ1	72 aa		11.48	□□□□□ -0.57
SNX17-209	ENST00000494893	DNAH5	Q8TE73	4624 aa		11.47	□□□□□ -0.57
SNX17-209	ENST00000494893	COTL1	Q14019	142 aa		11.47	□□□□□ -0.57
SNX17-209	ENST00000494893	FAM19A2	Q8N3H0	131 aa		11.47	□□□□□ -0.57
SNX17-209	ENST00000494893	IGHV1-24	A0A0C4DH33	117 aa		11.46	□□□□□ -0.57
SNX17-209	ENST00000494893	PMCHL1	Q16048	86 aa		11.46	□□□□□ -0.57
SNX17-209	ENST00000494893	PDZD11	Q5EBL8	140 aa		11.46	□□□□□ -0.57
SNX17-209	ENST00000494893	NFE4	Q86UQ8	179 aa		11.46	□□□□□ -0.57
SNX17-209	ENST00000494893	LRP1B	Q9NZR2	4599 aa		11.45	□□□□□ -0.58
SNX17-209	ENST00000494893	AMT	P48728	403 aa		11.45	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 163.7 ms