RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 POLR2KP53803 58 aaKnown RBP12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 CKS1BP61024 79 aa12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 CARD19Q96LW7 228 aa12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 C9orf85Q96MD7 179 aa12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 CLUHP3Q96NS8 147 aa12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 FN1P02751 2386 aaKnown RBP12.15□□□□□ -0.46
CCDC88B-210ENST00000494566 SPINK8P0C7L1 97 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 UBE2D1P51668 147 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 C9JAW5 83 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 C1QTNF4Q9BXJ3 329 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 TMEM89A2RUT3 159 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 IGHV3-30P01768 117 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 IGHV3-30-5P0DP03 117 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 XGP55808 180 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 DAND5Q8N907 189 aa12.14□□□□□ -0.47
CCDC88B-210ENST00000494566 EIF4EBP3O60516 100 aaPredicted RBP12.13□□□□□ -0.47
CCDC88B-210ENST00000494566 TMEM61Q8N0U2 210 aa12.13□□□□□ -0.47
CCDC88B-210ENST00000494566 POM121L12Q8N7R1 296 aa12.13□□□□□ -0.47
CCDC88B-210ENST00000494566 MUSTN1Q8IVN3 82 aa12.13□□□□□ -0.47
CCDC88B-210ENST00000494566 A0A1W2PRX2 142 aa12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 RBMY1BA6NDE4 496 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 RBMY1EA6NEQ0 496 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 LGALS9O00182 355 aa12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 RBMY1DP0C7P1 496 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 ANKRD29Q8N6D5 301 aa12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 CDIP1Q9H305 208 aa12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 SETXQ7Z333 2677 aaKnown RBP12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 WFDC11Q8NEX6 87 aa12.12□□□□□ -0.47
CCDC88B-210ENST00000494566 M0QY20 66 aa12.11□□□□□ -0.47
CCDC88B-210ENST00000494566 KRTAP1-3Q8IUG1 177 aa12.11□□□□□ -0.47
CCDC88B-210ENST00000494566 SPATA25Q9BR10 227 aa12.11□□□□□ -0.47
CCDC88B-210ENST00000494566 PPP1R17O96001 155 aa12.1□□□□□ -0.47
CCDC88B-210ENST00000494566 ODF3Q96PU9 254 aa12.1□□□□□ -0.47
CCDC88B-210ENST00000494566 PRO1854Q9UHT4 67 aa12.1□□□□□ -0.47
CCDC88B-210ENST00000494566 VCX2Q9H322 139 aa12.09□□□□□ -0.47
CCDC88B-210ENST00000494566 HELZ2Q9BYK8 2649 aaKnown RBP12.09□□□□□ -0.47
CCDC88B-210ENST00000494566 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.09□□□□□ -0.47
CCDC88B-210ENST00000494566 IGKV2-29A2NJV5 120 aaPredicted RBP12.09□□□□□ -0.47
CCDC88B-210ENST00000494566 LINC01619G3V211 115 aa12.09□□□□□ -0.47
CCDC88B-210ENST00000494566 SLC25A29Q8N8R3 303 aa12.09□□□□□ -0.47
CCDC88B-210ENST00000494566 IGHV3OR16-12A0A075B7B8 117 aa12.08□□□□□ -0.48
CCDC88B-210ENST00000494566 TRAV26-1A0A087WT03 109 aa12.08□□□□□ -0.48
CCDC88B-210ENST00000494566 C10orf126Q8N4M7 172 aa12.08□□□□□ -0.48
CCDC88B-210ENST00000494566 ZNF625Q96I27 306 aaPredicted RBP12.08□□□□□ -0.48
CCDC88B-210ENST00000494566 CD28P10747 220 aa12.08□□□□□ -0.48
CCDC88B-210ENST00000494566 AMELXQ99217 191 aa12.08□□□□□ -0.48
CCDC88B-210ENST00000494566 A8MWV9 139 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 UBE2D3P61077 147 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 UBE2D2P62837 147 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 TRBV27A0A0K0K1C4 114 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 ZNF22P17026 224 aaPredicted RBP12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 RNF152Q8N8N0 203 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 NBEAL2Q6ZNJ1 2754 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 PDZD2O15018 2839 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 H3BMM0 161 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 DYNLRB2Q8TF09 96 aa12.07□□□□□ -0.48
CCDC88B-210ENST00000494566 Q6ZSN1 163 aa12.06□□□□□ -0.48
CCDC88B-210ENST00000494566 GEMIN7Q9H840 131 aaKnown RBP12.06□□□□□ -0.48
CCDC88B-210ENST00000494566 A0A1B0GV72 72 aa12.06□□□□□ -0.48
CCDC88B-210ENST00000494566 CIDEAO60543 219 aa12.06□□□□□ -0.48
CCDC88B-210ENST00000494566 Q6ZUT4 128 aa12.05□□□□□ -0.48
CCDC88B-210ENST00000494566 IGLV4-3A0A075B6K6 122 aa12.05□□□□□ -0.48
CCDC88B-210ENST00000494566 SLC25A20O43772 301 aa12.05□□□□□ -0.48
CCDC88B-210ENST00000494566 RHODO00212 210 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 NTN5Q8WTR8 489 aaPredicted RBP12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 MAP6D1Q9H9H5 199 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 ERG28Q9UKR5 140 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 ANK3Q12955 4377 aaKnown RBP12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 TEN1Q86WV5 123 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 TMEM141Q96I45 108 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 TIMM17AQ99595 171 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 TRGV11A0A075B6L2 103 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 TMEM223A0PJW6 202 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 ADAMTSL4-AS1Q5T5F5 129 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 C20orf203Q8NBC4 194 aa12.04□□□□□ -0.48
CCDC88B-210ENST00000494566 TRBV6-5A0A0K0K1A5 114 aa12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 TEX49A0A1B0GTD5 131 aa12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 IGHV3-30-3P0DP02 117 aa12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 RPL32P62910 135 aaKnown RBP12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 Q8N2B8 174 aa12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 C4orf3Q8WVX3 66 aa12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 PPDPFLQ8WWR9 84 aa12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 ESM1Q9NQ30 184 aa12.03□□□□□ -0.48
CCDC88B-210ENST00000494566 CLEC2BQ92478 149 aa12.02□□□□□ -0.48
CCDC88B-210ENST00000494566 DNAJC9-AS1A6NH13 148 aa12.02□□□□□ -0.49
CCDC88B-210ENST00000494566 IGHV3-33P01772 117 aa12.02□□□□□ -0.49
CCDC88B-210ENST00000494566 XCL2Q9UBD3 114 aa12.02□□□□□ -0.49
CCDC88B-210ENST00000494566 PEMTQ9UBM1 199 aa12.02□□□□□ -0.49
CCDC88B-210ENST00000494566 I3L3M4 83 aa12.01□□□□□ -0.49
CCDC88B-210ENST00000494566 PAPPA-AS1Q5QFB9 102 aa12.01□□□□□ -0.49
CCDC88B-210ENST00000494566 LINC01587Q99440 93 aa12.01□□□□□ -0.49
CCDC88B-210ENST00000494566 A0A0J9YXY3 114 aa12.01□□□□□ -0.49
CCDC88B-210ENST00000494566 NDUFA7O95182 113 aa12.01□□□□□ -0.49
CCDC88B-210ENST00000494566 DEFB114Q30KQ6 69 aa12.01□□□□□ -0.49
CCDC88B-210ENST00000494566 TIMM21Q9BVV7 248 aa12.01□□□□□ -0.49
CCDC88B-210ENST00000494566 TRBV20-1A0A075B6N2 111 aa12□□□□□ -0.49
CCDC88B-210ENST00000494566 IGHV3-53P01767 116 aa12□□□□□ -0.49
CCDC88B-210ENST00000494566 NOTCH2Q04721 2471 aa12□□□□□ -0.49
CCDC88B-210ENST00000494566 RNF183Q96D59 192 aa12□□□□□ -0.49
CCDC88B-210ENST00000494566 CRYBA4P53673 196 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms