RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TRAV8-6A0A0B4J262 113 aa11.79□□□□□ -0.52
LIME1-208ENST00000493265 TSHBP01222 138 aa11.79□□□□□ -0.52
LIME1-208ENST00000493265 FCER1GP30273 86 aa11.79□□□□□ -0.52
LIME1-208ENST00000493265 AMTP48728 403 aa11.79□□□□□ -0.52
LIME1-208ENST00000493265 TIRAPP58753 221 aa11.79□□□□□ -0.52
LIME1-208ENST00000493265 IQCJQ1A5X6 159 aa11.79□□□□□ -0.52
LIME1-208ENST00000493265 WFDC10BQ8IUB3 73 aa11.79□□□□□ -0.52
LIME1-208ENST00000493265 IGHV1-24A0A0C4DH33 117 aa11.78□□□□□ -0.52
LIME1-208ENST00000493265 TRBV27A0A0K0K1C4 114 aa11.78□□□□□ -0.52
LIME1-208ENST00000493265 TMEM97Q5BJF2 176 aa11.78□□□□□ -0.52
LIME1-208ENST00000493265 LGALS9CQ6DKI2 356 aa11.78□□□□□ -0.52
LIME1-208ENST00000493265 KIR2DL4Q99706 377 aa11.78□□□□□ -0.52
LIME1-208ENST00000493265 CHCHD5Q9BSY4 110 aa11.78□□□□□ -0.52
LIME1-208ENST00000493265 TRBV25-1A0A075B6N4 114 aa11.77□□□□□ -0.53
LIME1-208ENST00000493265 TCAPO15273 167 aa11.77□□□□□ -0.53
LIME1-208ENST00000493265 IFI27P40305 119 aaPredicted RBP11.77□□□□□ -0.53
LIME1-208ENST00000493265 PRSS3P2Q8NHM4 247 aa11.77□□□□□ -0.53
LIME1-208ENST00000493265 RPL32P62910 135 aaKnown RBP11.76□□□□□ -0.53
LIME1-208ENST00000493265 TMEM243Q9BU79 118 aa11.76□□□□□ -0.53
LIME1-208ENST00000493265 IGLV2-18A0A075B6J9 118 aa11.75□□□□□ -0.53
LIME1-208ENST00000493265 TMEM262E9PQX1 116 aa11.75□□□□□ -0.53
LIME1-208ENST00000493265 GAGE6Q13070 117 aa11.75□□□□□ -0.53
LIME1-208ENST00000493265 Q8N8P6 123 aa11.75□□□□□ -0.53
LIME1-208ENST00000493265 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.74□□□□□ -0.53
LIME1-208ENST00000493265 IGKV2-29A2NJV5 120 aaPredicted RBP11.74□□□□□ -0.53
LIME1-208ENST00000493265 PRSS47A8MTI9 375 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 UBE2L6O14933 153 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 SIVA1O15304 175 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 IGHV3-30P01768 117 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 IGHV3-33P01772 117 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 IGHV3-30-3P0DP02 117 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 IGHV3-30-5P0DP03 117 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 Q8N3U1 123 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 C18orf32Q8TCD1 76 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 Q9H8V8 135 aa11.74□□□□□ -0.53
LIME1-208ENST00000493265 NXT2Q9NPJ8 142 aaKnown RBP11.74□□□□□ -0.53
LIME1-208ENST00000493265 FA2HQ7L5A8 372 aa11.73□□□□□ -0.53
LIME1-208ENST00000493265 UPK3BQ9BT76 320 aa11.73□□□□□ -0.53
LIME1-208ENST00000493265 CHCHD7Q9BUK0 85 aa11.73□□□□□ -0.53
LIME1-208ENST00000493265 A0A087WX48 190 aa11.71□□□□□ -0.53
LIME1-208ENST00000493265 NIT1Q86X76 327 aa11.71□□□□□ -0.53
LIME1-208ENST00000493265 HECTD4Q9Y4D8 3996 aa11.7□□□□□ -0.54
LIME1-208ENST00000493265 M0R2N4 97 aa11.7□□□□□ -0.54
LIME1-208ENST00000493265 RNASEKQ6P5S7 137 aaKnown RBP11.7□□□□□ -0.54
LIME1-208ENST00000493265 PCLOQ9Y6V0 5065 aa11.7□□□□□ -0.54
LIME1-208ENST00000493265 ESDP10768 282 aa11.69□□□□□ -0.54
LIME1-208ENST00000493265 LAGE3Q14657 143 aa11.69□□□□□ -0.54
LIME1-208ENST00000493265 MPV17L2Q567V2 206 aa11.69□□□□□ -0.54
LIME1-208ENST00000493265 AMMECR1LQ6DCA0 310 aa11.69□□□□□ -0.54
LIME1-208ENST00000493265 BAGE3Q86Y29 109 aa11.69□□□□□ -0.54
LIME1-208ENST00000493265 Q8N976 141 aa11.69□□□□□ -0.54
LIME1-208ENST00000493265 DNAH10OSP0CZ25 163 aa11.68□□□□□ -0.54
LIME1-208ENST00000493265 RPL39P62891 51 aaKnown RBP11.68□□□□□ -0.54
LIME1-208ENST00000493265 ORMDL2Q53FV1 153 aa11.68□□□□□ -0.54
LIME1-208ENST00000493265 VPS13DQ5THJ4 4388 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 C1orf196B1AJZ1 125 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 LINC00614P0C842 121 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 FGF6P10767 208 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 BTF3P20290 206 aaKnown RBP11.67□□□□□ -0.54
LIME1-208ENST00000493265 RBX1P62877 108 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 LINC01556Q5JQF7 62 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 C20orf203Q8NBC4 194 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 URB1-AS1Q96HZ7 61 aa11.67□□□□□ -0.54
LIME1-208ENST00000493265 KIAA1109Q2LD37 5005 aa11.66□□□□□ -0.54
LIME1-208ENST00000493265 RAB5BP61020 215 aa11.66□□□□□ -0.54
LIME1-208ENST00000493265 PKIAP61925 76 aa11.66□□□□□ -0.54
LIME1-208ENST00000493265 TMEM18Q96B42 140 aa11.66□□□□□ -0.54
LIME1-208ENST00000493265 AP5S1Q9NUS5 200 aa11.66□□□□□ -0.54
LIME1-208ENST00000493265 NBDYA0A0U1RRE5 68 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BKO60814 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 ANGP03950 147 aaKnown RBP11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BJP06899 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BOP23527 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BBP33778 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BDP58876 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BCP62807 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 PMCHL1Q16048 86 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST2H2BEQ16778 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BHQ93079 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BNQ99877 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 HIST1H2BMQ99879 126 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 KLK12Q9UKR0 248 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 DNAH6Q9C0G6 4158 aa11.65□□□□□ -0.54
LIME1-208ENST00000493265 IGLV4-60A0A075B6I1 120 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 TRAV9-2A0A087WT02 112 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 H7C423 109 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 K7EMI3 77 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 Q0VG73 95 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 DGAT2L7PQ6IED9 249 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 CLPSL2Q6UWE3 100 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 C2orf66Q6UXQ4 117 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 TMEM101Q96IK0 257 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 KRTAP1-5Q9BYS1 174 aa11.64□□□□□ -0.55
LIME1-208ENST00000493265 LINC01546A6NGU7 62 aa11.63□□□□□ -0.55
LIME1-208ENST00000493265 OR5A1Q8NGJ0 315 aa11.63□□□□□ -0.55
LIME1-208ENST00000493265 CYSLTR1Q9Y271 337 aa11.63□□□□□ -0.55
LIME1-208ENST00000493265 SERF1AO75920 110 aa11.62□□□□□ -0.55
LIME1-208ENST00000493265 TTC32Q5I0X7 151 aa11.62□□□□□ -0.55
LIME1-208ENST00000493265 Q9HAA7 133 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms