RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 LINC00482Q8N8I6 264 aa15.19■□□□□ 0.02
CCDC88B-208ENST00000492980 PTTG1IPP53801 180 aa15.18■□□□□ 0.02
CCDC88B-208ENST00000492980 NFE4Q86UQ8 179 aa15.18■□□□□ 0.02
CCDC88B-208ENST00000492980 OR4C5Q8NGB2 326 aa15.18■□□□□ 0.02
CCDC88B-208ENST00000492980 PYGO1Q9Y3Y4 419 aa15.18■□□□□ 0.02
CCDC88B-208ENST00000492980 K7EP13 123 aa15.17■□□□□ 0.02
CCDC88B-208ENST00000492980 HERVK_113P61574 105 aa15.17■□□□□ 0.02
CCDC88B-208ENST00000492980 Q6ZTI0 123 aa15.17■□□□□ 0.02
CCDC88B-208ENST00000492980 CEND1Q8N111 149 aa15.17■□□□□ 0.02
CCDC88B-208ENST00000492980 TM2D2Q9BX73 214 aa15.17■□□□□ 0.02
CCDC88B-208ENST00000492980 TAL2Q16559 108 aa15.17■□□□□ 0.02
CCDC88B-208ENST00000492980 CHCHD7Q9BUK0 85 aa15.17■□□□□ 0.02
CCDC88B-208ENST00000492980 CSNK1G2-AS1Q8NCQ2 148 aa15.16■□□□□ 0.02
CCDC88B-208ENST00000492980 FAM104AQ969W3 186 aa15.16■□□□□ 0.02
CCDC88B-208ENST00000492980 JMJD1CQ15652 2540 aa15.16■□□□□ 0.02
CCDC88B-208ENST00000492980 TMEM170BQ5T4T1 132 aa15.16■□□□□ 0.02
CCDC88B-208ENST00000492980 ZNF479Q96JC4 524 aa15.16■□□□□ 0.02
CCDC88B-208ENST00000492980 NOTCH2Q04721 2471 aa15.15■□□□□ 0.02
CCDC88B-208ENST00000492980 C9orf118A6NHY6 69 aa15.15■□□□□ 0.02
CCDC88B-208ENST00000492980 C1QTNF4Q9BXJ3 329 aa15.15■□□□□ 0.02
CCDC88B-208ENST00000492980 VCX2Q9H322 139 aa15.15■□□□□ 0.02
CCDC88B-208ENST00000492980 IGHV3-38A0A0C4DH36 116 aa15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 PLAC8L1A1L4L8 177 aa15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 ZNF815PA8K554 130 aa15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 AMMECR1LQ6DCA0 310 aa15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 PHLDA1Q8WV24 401 aaPredicted RBP15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 DAZ2Q13117 558 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 C16orf74Q96GX8 76 aa15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 NOP10Q9NPE3 64 aaKnown RBP15.14■□□□□ 0.01
CCDC88B-208ENST00000492980 TRBV7-3A0A075B6L6 115 aa15.13■□□□□ 0.01
CCDC88B-208ENST00000492980 TRAV4A0A0B4J268 109 aa15.13■□□□□ 0.01
CCDC88B-208ENST00000492980 AMELXQ99217 191 aa15.13■□□□□ 0.01
CCDC88B-208ENST00000492980 CEMP1Q6PRD7 247 aaPredicted RBP15.13■□□□□ 0.01
CCDC88B-208ENST00000492980 COTL1Q14019 142 aa15.12■□□□□ 0.01
CCDC88B-208ENST00000492980 RAB37Q96AX2 223 aa15.12■□□□□ 0.01
CCDC88B-208ENST00000492980 HIST1H4GQ99525 98 aa15.12■□□□□ 0.01
CCDC88B-208ENST00000492980 NSD1Q96L73 2696 aaPredicted RBP15.12■□□□□ 0.01
CCDC88B-208ENST00000492980 SMIM13P0DJ93 91 aa15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 CRYBA4P53673 196 aa15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 TSPEAR-AS2P59090 65 aa15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 PLEKHB2Q96CS7 222 aa15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 UBE2D4Q9Y2X8 147 aa15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 A0A0J9YXV3 536 aa15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 IGKV2-29A2NJV5 120 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 SPANXA1Q9NS26 97 aa15.11■□□□□ 0.01
CCDC88B-208ENST00000492980 ZNF22P17026 224 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-208ENST00000492980 TMEM223A0PJW6 202 aa15.1■□□□□ 0.01
CCDC88B-208ENST00000492980 H3BUT2 72 aa15.1■□□□□ 0.01
CCDC88B-208ENST00000492980 K7EQD1 137 aa15.1■□□□□ 0.01
CCDC88B-208ENST00000492980 NAA38Q9BRA0 125 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-208ENST00000492980 NHP2Q9NX24 153 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-208ENST00000492980 TRBV10-1A0A0K0K1A3 114 aa15.08■□□□□ 0.01
CCDC88B-208ENST00000492980 K7ERJ3 54 aa15.08■□□□□ 0.01
CCDC88B-208ENST00000492980 RRN3P1Q2M238 152 aa15.08■□□□□ 0.01
CCDC88B-208ENST00000492980 SCGB1D4Q6XE38 83 aa15.08■□□□□ 0
CCDC88B-208ENST00000492980 SPATA3Q8NHX4 192 aa15.08■□□□□ 0
CCDC88B-208ENST00000492980 FN1P02751 2386 aaKnown RBP15.08■□□□□ 0
CCDC88B-208ENST00000492980 C2CD3Q4AC94 2353 aa15.07■□□□□ 0
CCDC88B-208ENST00000492980 FOSL1P15407 271 aa15.07■□□□□ 0
CCDC88B-208ENST00000492980 RNASE13Q5GAN3 156 aaKnown RBP15.07■□□□□ 0
CCDC88B-208ENST00000492980 OVOL2Q9BRP0 275 aa15.07■□□□□ 0
CCDC88B-208ENST00000492980 MRPS36P82909 103 aaKnown RBP15.07■□□□□ 0
CCDC88B-208ENST00000492980 SLC25A29Q8N8R3 303 aa15.07■□□□□ 0
CCDC88B-208ENST00000492980 J3QQQ9 107 aa15.06■□□□□ 0
CCDC88B-208ENST00000492980 RPL36AP83881 106 aaKnown RBP15.06■□□□□ 0
CCDC88B-208ENST00000492980 RPL36ALQ969Q0 106 aaKnown RBP15.06■□□□□ 0
CCDC88B-208ENST00000492980 GAGE12BA1L429 117 aa15.05■□□□□ 0
CCDC88B-208ENST00000492980 CRLF1O75462 422 aa15.05■□□□□ 0
CCDC88B-208ENST00000492980 GAGE7O76087 117 aa15.05■□□□□ 0
CCDC88B-208ENST00000492980 GAGE12FP0CL80 117 aa15.05■□□□□ 0
CCDC88B-208ENST00000492980 GAGE12GP0CL81 117 aa15.05■□□□□ 0
CCDC88B-208ENST00000492980 GAGE12IP0CL82 117 aa15.05■□□□□ 0
CCDC88B-208ENST00000492980 Q6ZUT4 128 aa15.05■□□□□ 0
CCDC88B-208ENST00000492980 LEPROTO15243 131 aa15.05■□□□□ -0
CCDC88B-208ENST00000492980 A0A0J9YY99 117 aa15.04■□□□□ -0
CCDC88B-208ENST00000492980 INSL3P51460 131 aa15.04■□□□□ -0
CCDC88B-208ENST00000492980 TRGV2A0A075B6R0 118 aa15.04■□□□□ -0
CCDC88B-208ENST00000492980 LGALS3P17931 250 aaKnown RBP15.04■□□□□ -0
CCDC88B-208ENST00000492980 HIVEP1P15822 2718 aa15.03■□□□□ -0
CCDC88B-208ENST00000492980 A0A1W2PPM0 123 aa15.03■□□□□ -0
CCDC88B-208ENST00000492980 UBE2D3P61077 147 aa15.03■□□□□ -0
CCDC88B-208ENST00000492980 UBE2D2P62837 147 aa15.03■□□□□ -0
CCDC88B-208ENST00000492980 C9orf66Q5T8R8 295 aa15.03■□□□□ -0
CCDC88B-208ENST00000492980 C12orf74Q32Q52 190 aa15.02■□□□□ -0
CCDC88B-208ENST00000492980 DAZ4Q86SG3 579 aaKnown RBP15.02■□□□□ -0
CCDC88B-208ENST00000492980 DAZ3Q9NR90 486 aaKnown RBP15.02■□□□□ -0
CCDC88B-208ENST00000492980 GAGE12JA6NER3 117 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 GAGE10A6NGK3 116 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 GAGE4Q13068 117 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 GAGE5Q13069 117 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 GAGE13Q4V321 117 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 OR5A1Q8NGJ0 315 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 TIMM21Q9BVV7 248 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 NOTCH3Q9UM47 2321 aa15.02□□□□□ -0.01
CCDC88B-208ENST00000492980 IGHV3-64A0A075B6Q5 118 aa15.01□□□□□ -0.01
CCDC88B-208ENST00000492980 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-208ENST00000492980 TINCRA0A1B0GVN0 87 aa15.01□□□□□ -0.01
CCDC88B-208ENST00000492980 A0A1B0GWB2 263 aa15.01□□□□□ -0.01
CCDC88B-208ENST00000492980 CIDEAO60543 219 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms