RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 KANTRA0A1W2PQU2 76 aa7.86□□□□□ -1.15
CPSF3-204ENST00000489403 HMSDA8MTL9 139 aa7.86□□□□□ -1.15
CPSF3-204ENST00000489403 RNF185Q96GF1 192 aa7.86□□□□□ -1.15
CPSF3-204ENST00000489403 DPH3P1Q9H4G8 78 aa7.86□□□□□ -1.15
CPSF3-204ENST00000489403 RAB19A4D1S5 217 aa7.85□□□□□ -1.15
CPSF3-204ENST00000489403 TRGC1P0CF51 173 aa7.85□□□□□ -1.15
CPSF3-204ENST00000489403 WDR73Q6P4I2 378 aa7.85□□□□□ -1.15
CPSF3-204ENST00000489403 LYZL1Q6UWQ5 148 aa7.85□□□□□ -1.15
CPSF3-204ENST00000489403 C15orf56Q8N910 161 aa7.85□□□□□ -1.15
CPSF3-204ENST00000489403 SMIM12Q96EX1 92 aa7.85□□□□□ -1.15
CPSF3-204ENST00000489403 NIT2Q9NQR4 276 aa7.85□□□□□ -1.15
CPSF3-204ENST00000489403 XKRY2A2RUG3 117 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 F2Z2F3 143 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 UBE2L6O14933 153 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 NTF3P20783 257 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 AMTP48728 403 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 SULT1A2P50226 295 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 EIF5AP63241 154 aaKnown RBP7.84□□□□□ -1.15
CPSF3-204ENST00000489403 COTL1Q14019 142 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 DPH3Q96FX2 82 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 PLAC8Q9NZF1 115 aa7.84□□□□□ -1.15
CPSF3-204ENST00000489403 TRBV20OR9-2A0A075B6H5 130 aa7.83□□□□□ -1.16
CPSF3-204ENST00000489403 TRAV1-1A0A0B4J248 108 aa7.83□□□□□ -1.16
CPSF3-204ENST00000489403 GAGE12HA6NDE8 117 aa7.83□□□□□ -1.16
CPSF3-204ENST00000489403 PHOX2AO14813 284 aa7.83□□□□□ -1.16
CPSF3-204ENST00000489403 GNG4P50150 75 aa7.83□□□□□ -1.16
CPSF3-204ENST00000489403 IGKV3OR2-268A0A0C4DH90 116 aa7.82□□□□□ -1.16
CPSF3-204ENST00000489403 IFNA1P01562 189 aa7.82□□□□□ -1.16
CPSF3-204ENST00000489403 CTRLP40313 264 aa7.82□□□□□ -1.16
CPSF3-204ENST00000489403 COX6A2Q02221 97 aa7.82□□□□□ -1.16
CPSF3-204ENST00000489403 HIGD2BQ4VC39 106 aa7.82□□□□□ -1.16
CPSF3-204ENST00000489403 MEF2BQ02080 365 aaPredicted RBP7.81□□□□□ -1.16
CPSF3-204ENST00000489403 C9orf62Q8N4C0 152 aa7.81□□□□□ -1.16
CPSF3-204ENST00000489403 GATD1Q8NB37 220 aa7.81□□□□□ -1.16
CPSF3-204ENST00000489403 TRAV26-2A0A0B4J265 109 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 PDE6DO43924 150 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 NDUFS6O75380 124 aaKnown RBP7.8□□□□□ -1.16
CPSF3-204ENST00000489403 RPS10P46783 165 aaKnown RBP7.8□□□□□ -1.16
CPSF3-204ENST00000489403 TWIST1Q15672 202 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 CFAP161Q6P656 301 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 Q6ZNX1 250 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 NUDT10Q8NFP7 164 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 PRSS3P2Q8NHM4 247 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 C7orf33Q8WU49 177 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 NUDT11Q96G61 164 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 CNFNQ9BYD5 112 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 BIN3Q9NQY0 253 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 MED9Q9NWA0 146 aa7.8□□□□□ -1.16
CPSF3-204ENST00000489403 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.79□□□□□ -1.16
CPSF3-204ENST00000489403 IGKV2-24A0A0C4DH68 120 aa7.79□□□□□ -1.16
CPSF3-204ENST00000489403 IGKV2-29A2NJV5 120 aaPredicted RBP7.79□□□□□ -1.16
CPSF3-204ENST00000489403 TEX46H3BTG2 121 aa7.79□□□□□ -1.16
CPSF3-204ENST00000489403 MAJINQ3KP22 176 aa7.79□□□□□ -1.16
CPSF3-204ENST00000489403 CHCHD10Q8WYQ3 142 aaPredicted RBP7.79□□□□□ -1.16
CPSF3-204ENST00000489403 RPL39LQ96EH5 51 aaKnown RBP7.79□□□□□ -1.16
CPSF3-204ENST00000489403 LRP2P98164 4655 aa7.79□□□□□ -1.16
CPSF3-204ENST00000489403 RNF213Q63HN8 5207 aa7.78□□□□□ -1.16
CPSF3-204ENST00000489403 GVQW2A0A096LPI5 108 aaPredicted RBP7.78□□□□□ -1.16
CPSF3-204ENST00000489403 BCL2P10415 239 aa7.78□□□□□ -1.16
CPSF3-204ENST00000489403 PRR3P79522 188 aaKnown RBP7.78□□□□□ -1.16
CPSF3-204ENST00000489403 AMMECR1LQ6DCA0 310 aa7.78□□□□□ -1.16
CPSF3-204ENST00000489403 STPG4Q8N801 248 aa7.78□□□□□ -1.16
CPSF3-204ENST00000489403 RNASE7Q9H1E1 156 aaKnown RBP7.78□□□□□ -1.16
CPSF3-204ENST00000489403 K7EN84 100 aa7.77□□□□□ -1.17
CPSF3-204ENST00000489403 NCR2O95944 276 aa7.77□□□□□ -1.17
CPSF3-204ENST00000489403 APCSP02743 223 aa7.77□□□□□ -1.17
CPSF3-204ENST00000489403 FOXI1Q12951 378 aa7.77□□□□□ -1.17
CPSF3-204ENST00000489403 RNASEKQ6P5S7 137 aaKnown RBP7.77□□□□□ -1.17
CPSF3-204ENST00000489403 GTSF1Q8WW33 167 aa7.77□□□□□ -1.17
CPSF3-204ENST00000489403 LINC01600Q96MT4 127 aa7.77□□□□□ -1.17
CPSF3-204ENST00000489403 RPP21Q9H633 154 aaKnown RBP7.77□□□□□ -1.17
CPSF3-204ENST00000489403 A0A096LNI7 61 aa7.76□□□□□ -1.17
CPSF3-204ENST00000489403 H7C423 109 aa7.76□□□□□ -1.17
CPSF3-204ENST00000489403 FGF6P10767 208 aa7.76□□□□□ -1.17
CPSF3-204ENST00000489403 FOXA3P55318 350 aaPredicted RBP7.76□□□□□ -1.17
CPSF3-204ENST00000489403 EIF5AL1Q6IS14 154 aaKnown RBP7.76□□□□□ -1.17
CPSF3-204ENST00000489403 LYPD6BQ8NI32 183 aa7.76□□□□□ -1.17
CPSF3-204ENST00000489403 SDHAF1A6NFY7 115 aa7.75□□□□□ -1.17
CPSF3-204ENST00000489403 ODF1Q14990 250 aa7.75□□□□□ -1.17
CPSF3-204ENST00000489403 OR5A1Q8NGJ0 315 aa7.75□□□□□ -1.17
CPSF3-204ENST00000489403 ZNF25P17030 456 aaPredicted RBP7.74□□□□□ -1.17
CPSF3-204ENST00000489403 OCC1Q8TAD7 63 aa7.74□□□□□ -1.17
CPSF3-204ENST00000489403 FAM231BA6NCW3 169 aa7.73□□□□□ -1.17
CPSF3-204ENST00000489403 CCL25O15444 150 aa7.73□□□□□ -1.17
CPSF3-204ENST00000489403 XCL1P47992 114 aa7.73□□□□□ -1.17
CPSF3-204ENST00000489403 SMIM15Q7Z3B0 74 aa7.73□□□□□ -1.17
CPSF3-204ENST00000489403 LINC00526Q96FQ7 95 aa7.73□□□□□ -1.17
CPSF3-204ENST00000489403 IGHV1-58A0A0C4DH39 117 aa7.72□□□□□ -1.17
CPSF3-204ENST00000489403 A0A0J9YXV3 536 aa7.72□□□□□ -1.17
CPSF3-204ENST00000489403 LINC00959A0A1B0GUT2 108 aa7.72□□□□□ -1.17
CPSF3-204ENST00000489403 I3L3M4 83 aa7.72□□□□□ -1.17
CPSF3-204ENST00000489403 PMCHP20382 165 aa7.72□□□□□ -1.17
CPSF3-204ENST00000489403 TAGLN2P37802 199 aaKnown RBP7.72□□□□□ -1.17
CPSF3-204ENST00000489403 TEX261Q6UWH6 196 aa7.72□□□□□ -1.17
CPSF3-204ENST00000489403 TRBV6-5A0A0K0K1A5 114 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 GAS8-AS1O95177 125 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 ESDP10768 282 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 LCE2CQ5TA81 110 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 SPINK6Q6UWN8 80 aa7.71□□□□□ -1.18
CPSF3-204ENST00000489403 TMEM101Q96IK0 257 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms