RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 SLPIP03973 132 aa13.24□□□□□ -0.29
NPHP4-209ENST00000489180 SDIM1Q6ZPB5 146 aa13.24□□□□□ -0.29
NPHP4-209ENST00000489180 SPANXB1Q9NS25 103 aaPredicted RBP13.24□□□□□ -0.29
NPHP4-209ENST00000489180 SMAD5-AS1Q9Y6J3 95 aa13.24□□□□□ -0.29
NPHP4-209ENST00000489180 TMEM131Q92545 1883 aa13.23□□□□□ -0.29
NPHP4-209ENST00000489180 TRBV10-1A0A0K0K1A3 114 aa13.23□□□□□ -0.29
NPHP4-209ENST00000489180 HIST2H2BDQ6DRA6 164 aa13.23□□□□□ -0.29
NPHP4-209ENST00000489180 LINC00643Q86TS7 51 aa13.23□□□□□ -0.29
NPHP4-209ENST00000489180 TMEM223A0PJW6 202 aa13.23□□□□□ -0.29
NPHP4-209ENST00000489180 C19orf84I3L1E1 186 aa13.23□□□□□ -0.29
NPHP4-209ENST00000489180 ZNF22P17026 224 aaPredicted RBP13.22□□□□□ -0.29
NPHP4-209ENST00000489180 UPK3BQ9BT76 320 aa13.22□□□□□ -0.29
NPHP4-209ENST00000489180 RNF185Q96GF1 192 aa13.22□□□□□ -0.29
NPHP4-209ENST00000489180 FBXL19-AS1Q494R0 122 aa13.22□□□□□ -0.29
NPHP4-209ENST00000489180 FAM110AQ9BQ89 295 aa13.22□□□□□ -0.29
NPHP4-209ENST00000489180 PROK1P58294 105 aa13.21□□□□□ -0.29
NPHP4-209ENST00000489180 TNCP24821 2201 aa13.21□□□□□ -0.29
NPHP4-209ENST00000489180 IGLV4-3A0A075B6K6 122 aa13.21□□□□□ -0.29
NPHP4-209ENST00000489180 TM2D2Q9BX73 214 aa13.21□□□□□ -0.29
NPHP4-209ENST00000489180 NDUFV3P56181 108 aaKnown RBP13.21□□□□□ -0.3
NPHP4-209ENST00000489180 FAM208BQ5VWN6 2430 aa13.21□□□□□ -0.3
NPHP4-209ENST00000489180 TNFRSF13BO14836 293 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-209ENST00000489180 PIK3CD-AS1Q5SR53 167 aa13.2□□□□□ -0.3
NPHP4-209ENST00000489180 H0Y9J4 135 aa13.2□□□□□ -0.3
NPHP4-209ENST00000489180 REG3AQ06141 175 aa13.2□□□□□ -0.3
NPHP4-209ENST00000489180 NDUFC2O95298 119 aa13.19□□□□□ -0.3
NPHP4-209ENST00000489180 K7EQG2 157 aa13.19□□□□□ -0.3
NPHP4-209ENST00000489180 SCXQ7RTU7 201 aa13.19□□□□□ -0.3
NPHP4-209ENST00000489180 IGKV2-24A0A0C4DH68 120 aa13.19□□□□□ -0.3
NPHP4-209ENST00000489180 ZFAND3Q9H8U3 227 aa13.19□□□□□ -0.3
NPHP4-209ENST00000489180 PKIGQ9Y2B9 76 aa13.19□□□□□ -0.3
NPHP4-209ENST00000489180 TRIAP1O43715 76 aa13.18□□□□□ -0.3
NPHP4-209ENST00000489180 A8MZ25 164 aa13.18□□□□□ -0.3
NPHP4-209ENST00000489180 C10orf99Q6UWK7 81 aa13.18□□□□□ -0.3
NPHP4-209ENST00000489180 U3KQK5 164 aa13.17□□□□□ -0.3
NPHP4-209ENST00000489180 IGLV2-11P01706 119 aa13.17□□□□□ -0.3
NPHP4-209ENST00000489180 CHCHD10Q8WYQ3 142 aaPredicted RBP13.17□□□□□ -0.3
NPHP4-209ENST00000489180 ODF3Q96PU9 254 aa13.17□□□□□ -0.3
NPHP4-209ENST00000489180 BDP1A6H8Y1 2624 aa13.16□□□□□ -0.3
NPHP4-209ENST00000489180 LINC00308Q8TCZ7 52 aa13.16□□□□□ -0.3
NPHP4-209ENST00000489180 PCNX3Q9H6A9 2034 aa13.16□□□□□ -0.3
NPHP4-209ENST00000489180 FAM222AQ5U5X8 452 aa13.16□□□□□ -0.3
NPHP4-209ENST00000489180 M0QY20 66 aa13.16□□□□□ -0.3
NPHP4-209ENST00000489180 NUP210LQ5VU65 1888 aa13.15□□□□□ -0.3
NPHP4-209ENST00000489180 LY6LH3BQJ8 138 aa13.15□□□□□ -0.3
NPHP4-209ENST00000489180 CFAP126Q5VTH2 177 aa13.15□□□□□ -0.3
NPHP4-209ENST00000489180 BRK1Q8WUW1 75 aa13.15□□□□□ -0.3
NPHP4-209ENST00000489180 DEFB114Q30KQ6 69 aa13.14□□□□□ -0.31
NPHP4-209ENST00000489180 MED12LQ86YW9 2145 aa13.14□□□□□ -0.31
NPHP4-209ENST00000489180 BPY2O14599 106 aa13.14□□□□□ -0.31
NPHP4-209ENST00000489180 C20orf197Q8N268 126 aa13.14□□□□□ -0.31
NPHP4-209ENST00000489180 PCDH15Q96QU1 1955 aa13.14□□□□□ -0.31
NPHP4-209ENST00000489180 UFSP1Q6NVU6 142 aa13.13□□□□□ -0.31
NPHP4-209ENST00000489180 ENHOQ6UWT2 76 aa13.13□□□□□ -0.31
NPHP4-209ENST00000489180 MUC6Q6W4X9 2439 aa13.13□□□□□ -0.31
NPHP4-209ENST00000489180 ALPK3Q96L96 1907 aa13.13□□□□□ -0.31
NPHP4-209ENST00000489180 A0A096LNI7 61 aa13.13□□□□□ -0.31
NPHP4-209ENST00000489180 HIGD2AQ9BW72 106 aa13.13□□□□□ -0.31
NPHP4-209ENST00000489180 Q6YL49 198 aa13.13□□□□□ -0.31
NPHP4-209ENST00000489180 PTPRQQ9UMZ3 2332 aa13.12□□□□□ -0.31
NPHP4-209ENST00000489180 TTC28Q96AY4 2481 aa13.12□□□□□ -0.31
NPHP4-209ENST00000489180 PDE6GP18545 87 aa13.12□□□□□ -0.31
NPHP4-209ENST00000489180 KIAA1549Q9HCM3 1950 aa13.12□□□□□ -0.31
NPHP4-209ENST00000489180 C2orf91Q6ZV80 131 aa13.11□□□□□ -0.31
NPHP4-209ENST00000489180 GAS8-AS1O95177 125 aa13.11□□□□□ -0.31
NPHP4-209ENST00000489180 DCANP1Q8TF63 244 aa13.11□□□□□ -0.31
NPHP4-209ENST00000489180 TANC2Q9HCD6 1990 aa13.11□□□□□ -0.31
NPHP4-209ENST00000489180 PRR9Q5T870 116 aa13.11□□□□□ -0.31
NPHP4-209ENST00000489180 IGHV4-31P0DP07 118 aa13.1□□□□□ -0.31
NPHP4-209ENST00000489180 MPLKIPQ8TAP9 179 aa13.1□□□□□ -0.31
NPHP4-209ENST00000489180 MRPS12O15235 138 aaKnown RBP13.1□□□□□ -0.31
NPHP4-209ENST00000489180 Q8N976 141 aa13.1□□□□□ -0.31
NPHP4-209ENST00000489180 C11orf45Q8TAV5 145 aa13.1□□□□□ -0.31
NPHP4-209ENST00000489180 XAGE1AQ9HD64 81 aa13.1□□□□□ -0.31
NPHP4-209ENST00000489180 C11orf21Q9P2W6 132 aa13.09□□□□□ -0.31
NPHP4-209ENST00000489180 INSL3P51460 131 aa13.09□□□□□ -0.31
NPHP4-209ENST00000489180 LINC00482Q8N8I6 264 aa13.08□□□□□ -0.31
NPHP4-209ENST00000489180 NRACQ8N912 160 aa13.08□□□□□ -0.31
NPHP4-209ENST00000489180 TRBV30A0A0K0K1B3 111 aa13.08□□□□□ -0.32
NPHP4-209ENST00000489180 PRM2P04554 102 aa13.08□□□□□ -0.32
NPHP4-209ENST00000489180 RBX1P62877 108 aa13.08□□□□□ -0.32
NPHP4-209ENST00000489180 EBI3Q14213 229 aa13.08□□□□□ -0.32
NPHP4-209ENST00000489180 B9D2Q9BPU9 175 aa13.08□□□□□ -0.32
NPHP4-209ENST00000489180 IGKV4-1P06312 121 aa13.07□□□□□ -0.32
NPHP4-209ENST00000489180 UQCRQO14949 82 aa13.07□□□□□ -0.32
NPHP4-209ENST00000489180 TECTAO75443 2155 aa13.07□□□□□ -0.32
NPHP4-209ENST00000489180 TRBV6-8A0A0A6YYG3 113 aa13.06□□□□□ -0.32
NPHP4-209ENST00000489180 TSHBP01222 138 aa13.06□□□□□ -0.32
NPHP4-209ENST00000489180 RNASE3P12724 160 aaKnown RBP13.06□□□□□ -0.32
NPHP4-209ENST00000489180 LTBP2Q14767 1821 aa13.06□□□□□ -0.32
NPHP4-209ENST00000489180 IBA57-AS1B1ANH7 110 aa13.06□□□□□ -0.32
NPHP4-209ENST00000489180 C4orf48Q5BLP8 95 aa13.05□□□□□ -0.32
NPHP4-209ENST00000489180 SVIPQ8NHG7 77 aa13.05□□□□□ -0.32
NPHP4-209ENST00000489180 H7C423 109 aa13.05□□□□□ -0.32
NPHP4-209ENST00000489180 FAM19A1Q7Z5A9 133 aa13.05□□□□□ -0.32
NPHP4-209ENST00000489180 TRBV27A0A0K0K1C4 114 aa13.04□□□□□ -0.32
NPHP4-209ENST00000489180 CRYGDP07320 174 aa13.04□□□□□ -0.32
NPHP4-209ENST00000489180 C3orf22Q8N5N4 141 aa13.04□□□□□ -0.32
NPHP4-209ENST00000489180 Q6ZS46 218 aa13.04□□□□□ -0.32
NPHP4-209ENST00000489180 C6orf99Q4VX62 202 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms