RNA–Protein interactions for RNA: ENST00000488250.5

RAPGEF3-211, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 1,947 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-211ENST00000488250 NFE4Q86UQ8 179 aa11.51□□□□□ -0.57
RAPGEF3-211ENST00000488250 TRGV1A0A0A0MS02 117 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 TAL2Q16559 108 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 OR4C5Q8NGB2 326 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 C16orf74Q96GX8 76 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 Q9UF83 564 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 IGLV4-3A0A075B6K6 122 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 MYMXA0A1B0GTQ4 84 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 PRADC1Q9BSG0 188 aa11.5□□□□□ -0.57
RAPGEF3-211ENST00000488250 TRAV4A0A0B4J268 109 aa11.49□□□□□ -0.57
RAPGEF3-211ENST00000488250 CRLF1O75462 422 aa11.49□□□□□ -0.57
RAPGEF3-211ENST00000488250 RPL35AP18077 110 aaKnown RBP11.49□□□□□ -0.57
RAPGEF3-211ENST00000488250 INSL3P51460 131 aa11.49□□□□□ -0.57
RAPGEF3-211ENST00000488250 HERVK_113P61574 105 aa11.49□□□□□ -0.57
RAPGEF3-211ENST00000488250 PLAC8L1A1L4L8 177 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 ZNRF2Q8NHG8 242 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 TEP1Q99973 2627 aaKnown RBP11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 CHCHD7Q9BUK0 85 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 TM2D2Q9BX73 214 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 FN1P02751 2386 aaKnown RBP11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 TRBV10-1A0A0K0K1A3 114 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 H3BRM9 83 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 Q6ZTI0 123 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 AMELXQ99217 191 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 OPRPNQ99935 248 aaPredicted RBP11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 OVOL2Q9BRP0 275 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 VCX2Q9H322 139 aa11.48□□□□□ -0.57
RAPGEF3-211ENST00000488250 FAM104AQ969W3 186 aa11.47□□□□□ -0.57
RAPGEF3-211ENST00000488250 SPANXA1Q9NS26 97 aa11.47□□□□□ -0.57
RAPGEF3-211ENST00000488250 CIDEAO60543 219 aa11.47□□□□□ -0.57
RAPGEF3-211ENST00000488250 EMP1P54849 157 aa11.47□□□□□ -0.57
RAPGEF3-211ENST00000488250 UBE2V1Q13404 147 aa11.47□□□□□ -0.57
RAPGEF3-211ENST00000488250 ZNF479Q96JC4 524 aa11.47□□□□□ -0.57
RAPGEF3-211ENST00000488250 JMJD1CQ15652 2540 aa11.46□□□□□ -0.57
RAPGEF3-211ENST00000488250 COTL1Q14019 142 aa11.46□□□□□ -0.58
RAPGEF3-211ENST00000488250 CEND1Q8N111 149 aa11.46□□□□□ -0.58
RAPGEF3-211ENST00000488250 NOP10Q9NPE3 64 aaKnown RBP11.46□□□□□ -0.58
RAPGEF3-211ENST00000488250 C2CD3Q4AC94 2353 aa11.46□□□□□ -0.58
RAPGEF3-211ENST00000488250 TRBV7-3A0A075B6L6 115 aa11.45□□□□□ -0.58
RAPGEF3-211ENST00000488250 RRN3P1Q2M238 152 aa11.45□□□□□ -0.58
RAPGEF3-211ENST00000488250 C9orf66Q5T8R8 295 aa11.45□□□□□ -0.58
RAPGEF3-211ENST00000488250 K7EQD1 137 aa11.45□□□□□ -0.58
RAPGEF3-211ENST00000488250 GCSHP23434 173 aa11.45□□□□□ -0.58
RAPGEF3-211ENST00000488250 TMEM170BQ5T4T1 132 aa11.45□□□□□ -0.58
RAPGEF3-211ENST00000488250 UBE2D4Q9Y2X8 147 aa11.45□□□□□ -0.58
RAPGEF3-211ENST00000488250 FXYD2P54710 66 aa11.44□□□□□ -0.58
RAPGEF3-211ENST00000488250 C9orf118A6NHY6 69 aa11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 ZNF815PA8K554 130 aa11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 CITED1Q99966 193 aa11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 TIMM21Q9BVV7 248 aa11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 TMEM223A0PJW6 202 aa11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 CCL25O15444 150 aa11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 MRPS36P82909 103 aaKnown RBP11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 RPL36AP83881 106 aaKnown RBP11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 VAMP3Q15836 100 aa11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 RPL36ALQ969Q0 106 aaKnown RBP11.43□□□□□ -0.58
RAPGEF3-211ENST00000488250 ZNF22P17026 224 aaPredicted RBP11.42□□□□□ -0.58
RAPGEF3-211ENST00000488250 PTTG1IPP53801 180 aa11.42□□□□□ -0.58
RAPGEF3-211ENST00000488250 DAZ4Q86SG3 579 aaKnown RBP11.42□□□□□ -0.58
RAPGEF3-211ENST00000488250 PHLDA1Q8WV24 401 aaPredicted RBP11.42□□□□□ -0.58
RAPGEF3-211ENST00000488250 DAZ3Q9NR90 486 aaKnown RBP11.42□□□□□ -0.58
RAPGEF3-211ENST00000488250 IGHV3-38A0A0C4DH36 116 aa11.41□□□□□ -0.58
RAPGEF3-211ENST00000488250 A0A0J9YXV3 536 aa11.41□□□□□ -0.58
RAPGEF3-211ENST00000488250 SMIM13P0DJ93 91 aa11.41□□□□□ -0.58
RAPGEF3-211ENST00000488250 SLC25A29Q8N8R3 303 aa11.41□□□□□ -0.58
RAPGEF3-211ENST00000488250 HIST1H4GQ99525 98 aa11.41□□□□□ -0.58
RAPGEF3-211ENST00000488250 UBE2D3P61077 147 aa11.41□□□□□ -0.58
RAPGEF3-211ENST00000488250 UBE2D2P62837 147 aa11.41□□□□□ -0.58
RAPGEF3-211ENST00000488250 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.4□□□□□ -0.58
RAPGEF3-211ENST00000488250 IGKV2-29A2NJV5 120 aaPredicted RBP11.4□□□□□ -0.58
RAPGEF3-211ENST00000488250 LEPROTO15243 131 aa11.4□□□□□ -0.58
RAPGEF3-211ENST00000488250 CEMP1Q6PRD7 247 aaPredicted RBP11.4□□□□□ -0.58
RAPGEF3-211ENST00000488250 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.4□□□□□ -0.58
RAPGEF3-211ENST00000488250 TRBV6-4A0A1B0GX49 114 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 GAGE12BA1L429 117 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 J3QQQ9 107 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 K7EP13 123 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 GAGE7O76087 117 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 GAGE12FP0CL80 117 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 GAGE12GP0CL81 117 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 GAGE12IP0CL82 117 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 TSPEAR-AS2P59090 65 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 AMMECR1LQ6DCA0 310 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 TRGV2A0A075B6R0 118 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 SPATA3Q8NHX4 192 aa11.39□□□□□ -0.59
RAPGEF3-211ENST00000488250 TINCRA0A1B0GVN0 87 aa11.38□□□□□ -0.59
RAPGEF3-211ENST00000488250 SCGB1D4Q6XE38 83 aa11.38□□□□□ -0.59
RAPGEF3-211ENST00000488250 PLEKHB2Q96CS7 222 aa11.38□□□□□ -0.59
RAPGEF3-211ENST00000488250 Q6ZUT4 128 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 LINC00612Q8N6U2 182 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 OR5A1Q8NGJ0 315 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 CSDC2Q9Y534 153 aaKnown RBP11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 A0A0J9YY99 117 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 A0A1B0GWB2 263 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 SMIM9A6NGZ8 99 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 LGALS3P17931 250 aaKnown RBP11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 KIR2DL5BQ8NHK3 375 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 GTSF1LQ9H1H1 148 aa11.37□□□□□ -0.59
RAPGEF3-211ENST00000488250 H3BUT2 72 aa11.36□□□□□ -0.59
RAPGEF3-211ENST00000488250 NTM-AS1Q6ZSK4 140 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms