RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 EMP1P54849 157 aa12□□□□□ -0.49
TMEM53-208ENST00000476724 SRSF9Q13242 221 aaKnown RBP eCLIP12□□□□□ -0.49
TMEM53-208ENST00000476724 TNFRSF18Q9Y5U5 241 aa12□□□□□ -0.49
TMEM53-208ENST00000476724 SETXQ7Z333 2677 aaKnown RBP12□□□□□ -0.49
TMEM53-208ENST00000476724 RHODO00212 210 aa11.99□□□□□ -0.49
TMEM53-208ENST00000476724 INSP01308 110 aa11.99□□□□□ -0.49
TMEM53-208ENST00000476724 LINC01587Q99440 93 aa11.99□□□□□ -0.49
TMEM53-208ENST00000476724 PLEKHB2Q96CS7 222 aa11.99□□□□□ -0.49
TMEM53-208ENST00000476724 VCX2Q9H322 139 aa11.99□□□□□ -0.49
TMEM53-208ENST00000476724 SPANXB1Q9NS25 103 aaPredicted RBP11.99□□□□□ -0.49
TMEM53-208ENST00000476724 RNF151Q2KHN1 245 aa11.98□□□□□ -0.49
TMEM53-208ENST00000476724 RRN3P1Q2M238 152 aa11.98□□□□□ -0.49
TMEM53-208ENST00000476724 A0A0J9YY99 117 aa11.98□□□□□ -0.49
TMEM53-208ENST00000476724 NDUFA7O95182 113 aa11.98□□□□□ -0.49
TMEM53-208ENST00000476724 FLNBO75369 2602 aaKnown RBP11.97□□□□□ -0.49
TMEM53-208ENST00000476724 WNK1Q9H4A3 2382 aa11.97□□□□□ -0.49
TMEM53-208ENST00000476724 IGLV4-3A0A075B6K6 122 aa11.97□□□□□ -0.49
TMEM53-208ENST00000476724 FHL3Q13643 280 aa11.97□□□□□ -0.49
TMEM53-208ENST00000476724 C11orf72Q8NBR9 251 aa11.97□□□□□ -0.49
TMEM53-208ENST00000476724 DNAJC30Q96LL9 226 aa11.97□□□□□ -0.49
TMEM53-208ENST00000476724 IGHV3-73A0A0B4J1V6 119 aa11.96□□□□□ -0.49
TMEM53-208ENST00000476724 TMEM223A0PJW6 202 aa11.96□□□□□ -0.49
TMEM53-208ENST00000476724 J3QQQ9 107 aa11.96□□□□□ -0.49
TMEM53-208ENST00000476724 LEPROTO15243 131 aa11.96□□□□□ -0.49
TMEM53-208ENST00000476724 LGALS3P17931 250 aaKnown RBP11.96□□□□□ -0.49
TMEM53-208ENST00000476724 PROK1P58294 105 aa11.96□□□□□ -0.49
TMEM53-208ENST00000476724 BEAN1Q3B7T3 259 aa11.96□□□□□ -0.49
TMEM53-208ENST00000476724 CFAP126Q5VTH2 177 aa11.96□□□□□ -0.49
TMEM53-208ENST00000476724 OPRPNQ99935 248 aaPredicted RBP11.96□□□□□ -0.49
TMEM53-208ENST00000476724 TSSC4Q9Y5U2 329 aaPredicted RBP11.96□□□□□ -0.49
TMEM53-208ENST00000476724 SLC25A29Q8N8R3 303 aa11.96□□□□□ -0.5
TMEM53-208ENST00000476724 CCL24O00175 119 aa11.95□□□□□ -0.5
TMEM53-208ENST00000476724 UBE2D1P51668 147 aa11.95□□□□□ -0.5
TMEM53-208ENST00000476724 VPS25Q9BRG1 176 aa11.95□□□□□ -0.5
TMEM53-208ENST00000476724 F8W1H4 67 aa11.95□□□□□ -0.5
TMEM53-208ENST00000476724 KRTAP10-3P60369 221 aa11.95□□□□□ -0.5
TMEM53-208ENST00000476724 AMELXQ99217 191 aa11.95□□□□□ -0.5
TMEM53-208ENST00000476724 IGHV3-53P01767 116 aa11.94□□□□□ -0.5
TMEM53-208ENST00000476724 RS1O15537 224 aa11.93□□□□□ -0.5
TMEM53-208ENST00000476724 ZNF22P17026 224 aaPredicted RBP11.93□□□□□ -0.5
TMEM53-208ENST00000476724 TSPEAR-AS2P59090 65 aa11.93□□□□□ -0.5
TMEM53-208ENST00000476724 ODF3L2Q3SX64 289 aa11.93□□□□□ -0.5
TMEM53-208ENST00000476724 STHQ8IWL8 128 aa11.93□□□□□ -0.5
TMEM53-208ENST00000476724 NACAE9PAV3 2078 aa11.93□□□□□ -0.5
TMEM53-208ENST00000476724 ADARB2-AS1A8MUL3 147 aa11.93□□□□□ -0.5
TMEM53-208ENST00000476724 PRM2P04554 102 aa11.93□□□□□ -0.5
TMEM53-208ENST00000476724 CMC4P56277 68 aaPredicted RBP11.93□□□□□ -0.5
TMEM53-208ENST00000476724 G3V4G9 280 aa11.92□□□□□ -0.5
TMEM53-208ENST00000476724 CRLF1O75462 422 aa11.92□□□□□ -0.5
TMEM53-208ENST00000476724 SPANXA1Q9NS26 97 aa11.92□□□□□ -0.5
TMEM53-208ENST00000476724 A0A0J9YXV3 536 aa11.91□□□□□ -0.5
TMEM53-208ENST00000476724 SAP30O75446 220 aa11.91□□□□□ -0.5
TMEM53-208ENST00000476724 MRPS36P82909 103 aaKnown RBP11.91□□□□□ -0.5
TMEM53-208ENST00000476724 PGPEP1Q9NXJ5 209 aa11.91□□□□□ -0.5
TMEM53-208ENST00000476724 IGHV3-30P01768 117 aa11.91□□□□□ -0.5
TMEM53-208ENST00000476724 IGHV3-30-5P0DP03 117 aa11.91□□□□□ -0.5
TMEM53-208ENST00000476724 PCP4P48539 62 aa11.91□□□□□ -0.5
TMEM53-208ENST00000476724 Q6ZSN1 163 aa11.91□□□□□ -0.5
TMEM53-208ENST00000476724 MRPL16Q9NX20 251 aaKnown RBP11.91□□□□□ -0.5
TMEM53-208ENST00000476724 C2CD3Q4AC94 2353 aa11.9□□□□□ -0.5
TMEM53-208ENST00000476724 CHCHD7Q9BUK0 85 aa11.9□□□□□ -0.5
TMEM53-208ENST00000476724 XCL2Q9UBD3 114 aa11.9□□□□□ -0.51
TMEM53-208ENST00000476724 F8P00451 2351 aa11.89□□□□□ -0.51
TMEM53-208ENST00000476724 FAM104AQ969W3 186 aa11.89□□□□□ -0.51
TMEM53-208ENST00000476724 COTL1Q14019 142 aa11.88□□□□□ -0.51
TMEM53-208ENST00000476724 LYRM7Q5U5X0 104 aa11.88□□□□□ -0.51
TMEM53-208ENST00000476724 NDUFA11Q86Y39 141 aa11.88□□□□□ -0.51
TMEM53-208ENST00000476724 UBE2D4Q9Y2X8 147 aa11.88□□□□□ -0.51
TMEM53-208ENST00000476724 CYSRT1A8MQ03 144 aa11.88□□□□□ -0.51
TMEM53-208ENST00000476724 H3BMG7 143 aa11.88□□□□□ -0.51
TMEM53-208ENST00000476724 C1orf158Q8N1D5 194 aa11.88□□□□□ -0.51
TMEM53-208ENST00000476724 IL17DQ8TAD2 202 aa11.87□□□□□ -0.51
TMEM53-208ENST00000476724 TINCRA0A1B0GVN0 87 aa11.87□□□□□ -0.51
TMEM53-208ENST00000476724 AZU1P20160 251 aa11.87□□□□□ -0.51
TMEM53-208ENST00000476724 GAGE13Q4V321 117 aa11.87□□□□□ -0.51
TMEM53-208ENST00000476724 TMEM238C9JI98 176 aa11.86□□□□□ -0.51
TMEM53-208ENST00000476724 APOMO95445 188 aa11.86□□□□□ -0.51
TMEM53-208ENST00000476724 RPL24P83731 157 aaKnown RBP11.86□□□□□ -0.51
TMEM53-208ENST00000476724 TIMM21Q9BVV7 248 aa11.86□□□□□ -0.51
TMEM53-208ENST00000476724 Q9UF83 564 aa11.86□□□□□ -0.51
TMEM53-208ENST00000476724 TSPAN13O95857 204 aa11.85□□□□□ -0.51
TMEM53-208ENST00000476724 BAHCC1Q9P281 2608 aa11.85□□□□□ -0.51
TMEM53-208ENST00000476724 CFC1BP0CG36 223 aa11.85□□□□□ -0.51
TMEM53-208ENST00000476724 CFC1P0CG37 223 aa11.85□□□□□ -0.51
TMEM53-208ENST00000476724 IGHV3-30-3P0DP02 117 aa11.85□□□□□ -0.51
TMEM53-208ENST00000476724 CEMP1Q6PRD7 247 aaPredicted RBP11.85□□□□□ -0.51
TMEM53-208ENST00000476724 FAM110AQ9BQ89 295 aa11.85□□□□□ -0.51
TMEM53-208ENST00000476724 IGHV1-58A0A0C4DH39 117 aa11.84□□□□□ -0.51
TMEM53-208ENST00000476724 UBE2D3P61077 147 aa11.84□□□□□ -0.51
TMEM53-208ENST00000476724 UBE2D2P62837 147 aa11.84□□□□□ -0.51
TMEM53-208ENST00000476724 C10orf126Q8N4M7 172 aa11.84□□□□□ -0.51
TMEM53-208ENST00000476724 TMEM263Q8WUH6 116 aaKnown RBP11.84□□□□□ -0.51
TMEM53-208ENST00000476724 TRBV10-1A0A0K0K1A3 114 aa11.83□□□□□ -0.51
TMEM53-208ENST00000476724 WFDC2Q14508 124 aa11.83□□□□□ -0.51
TMEM53-208ENST00000476724 PRO1854Q9UHT4 67 aa11.83□□□□□ -0.51
TMEM53-208ENST00000476724 IGHV3-64A0A075B6Q5 118 aa11.83□□□□□ -0.52
TMEM53-208ENST00000476724 IGHV3OR16-12A0A075B7B8 117 aa11.83□□□□□ -0.52
TMEM53-208ENST00000476724 TRGV1A0A0A0MS02 117 aa11.83□□□□□ -0.52
TMEM53-208ENST00000476724 J3QR89 54 aa11.83□□□□□ -0.52
TMEM53-208ENST00000476724 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms