RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 RNASE7Q9H1E1 156 aaKnown RBP12.75□□□□□ -0.37
COL9A3-210ENST00000472880 F2Z2F3 143 aa12.74□□□□□ -0.37
COL9A3-210ENST00000472880 RASL11AQ6T310 242 aa12.74□□□□□ -0.37
COL9A3-210ENST00000472880 TEX261Q6UWH6 196 aa12.74□□□□□ -0.37
COL9A3-210ENST00000472880 CLRN3Q8NCR9 226 aa12.74□□□□□ -0.37
COL9A3-210ENST00000472880 RPP21Q9H633 154 aaKnown RBP12.74□□□□□ -0.37
COL9A3-210ENST00000472880 LYZL1Q6UWQ5 148 aa12.73□□□□□ -0.37
COL9A3-210ENST00000472880 DPH3P1Q9H4G8 78 aa12.73□□□□□ -0.37
COL9A3-210ENST00000472880 TRAV8-4A0A0B4J246 113 aa12.72□□□□□ -0.37
COL9A3-210ENST00000472880 C20orf203Q8NBC4 194 aa12.72□□□□□ -0.37
COL9A3-210ENST00000472880 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.72□□□□□ -0.37
COL9A3-210ENST00000472880 UBE2L6O14933 153 aa12.71□□□□□ -0.37
COL9A3-210ENST00000472880 SRP19P09132 144 aaKnown RBP12.71□□□□□ -0.37
COL9A3-210ENST00000472880 CTRLP40313 264 aa12.71□□□□□ -0.37
COL9A3-210ENST00000472880 SERTAD4-AS1Q5TG53 156 aa12.71□□□□□ -0.37
COL9A3-210ENST00000472880 PGLYRP4Q96LB8 373 aa12.71□□□□□ -0.37
COL9A3-210ENST00000472880 SMIM7Q9BQ49 75 aa12.71□□□□□ -0.37
COL9A3-210ENST00000472880 NIT2Q9NQR4 276 aa12.71□□□□□ -0.37
COL9A3-210ENST00000472880 IGLV4-60A0A075B6I1 120 aa12.7□□□□□ -0.38
COL9A3-210ENST00000472880 A0A1B0GUV1 79 aa12.7□□□□□ -0.38
COL9A3-210ENST00000472880 hDV102S1A0JD36 115 aa12.7□□□□□ -0.38
COL9A3-210ENST00000472880 FAM231DQ6ZW35 169 aa12.7□□□□□ -0.38
COL9A3-210ENST00000472880 NTF3P20783 257 aa12.69□□□□□ -0.38
COL9A3-210ENST00000472880 AMTP48728 403 aa12.69□□□□□ -0.38
COL9A3-210ENST00000472880 CNBPP62633 177 aaKnown RBP12.69□□□□□ -0.38
COL9A3-210ENST00000472880 WDR73Q6P4I2 378 aa12.69□□□□□ -0.38
COL9A3-210ENST00000472880 AP5S1Q9NUS5 200 aa12.69□□□□□ -0.38
COL9A3-210ENST00000472880 LRP1Q07954 4544 aaKnown RBP12.68□□□□□ -0.38
COL9A3-210ENST00000472880 ZNF727A8MUV8 499 aa12.68□□□□□ -0.38
COL9A3-210ENST00000472880 GATCO43716 136 aaKnown RBP12.68□□□□□ -0.38
COL9A3-210ENST00000472880 COTL1Q14019 142 aa12.68□□□□□ -0.38
COL9A3-210ENST00000472880 SDIM1Q6ZPB5 146 aa12.68□□□□□ -0.38
COL9A3-210ENST00000472880 LINC01551Q86U37 167 aa12.68□□□□□ -0.38
COL9A3-210ENST00000472880 CNFNQ9BYD5 112 aa12.68□□□□□ -0.38
COL9A3-210ENST00000472880 PANO1I0J062 215 aa12.67□□□□□ -0.38
COL9A3-210ENST00000472880 GTSF1Q8WW33 167 aa12.67□□□□□ -0.38
COL9A3-210ENST00000472880 GFRA4Q9GZZ7 299 aa12.67□□□□□ -0.38
COL9A3-210ENST00000472880 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.66□□□□□ -0.38
COL9A3-210ENST00000472880 TWIST1Q15672 202 aa12.66□□□□□ -0.38
COL9A3-210ENST00000472880 IGHV3-64A0A075B6Q5 118 aa12.65□□□□□ -0.38
COL9A3-210ENST00000472880 HNRNPA3P51991 378 aaKnown RBP12.65□□□□□ -0.38
COL9A3-210ENST00000472880 CT83Q5H943 113 aa12.65□□□□□ -0.38
COL9A3-210ENST00000472880 FAT3Q8TDW7 4589 aa12.64□□□□□ -0.39
COL9A3-210ENST00000472880 A8MWL6 223 aa12.64□□□□□ -0.39
COL9A3-210ENST00000472880 C9JQL5 133 aa12.64□□□□□ -0.39
COL9A3-210ENST00000472880 PKHD1L1Q86WI1 4243 aa12.64□□□□□ -0.39
COL9A3-210ENST00000472880 SRSF3P84103 164 aaKnown RBP12.63□□□□□ -0.39
COL9A3-210ENST00000472880 CIRBPQ14011 172 aaKnown RBP12.63□□□□□ -0.39
COL9A3-210ENST00000472880 TRAV26-2A0A0B4J265 109 aa12.62□□□□□ -0.39
COL9A3-210ENST00000472880 PEA15Q15121 130 aa12.62□□□□□ -0.39
COL9A3-210ENST00000472880 FAM74A3Q4VXF1 159 aa12.62□□□□□ -0.39
COL9A3-210ENST00000472880 GATD1Q8NB37 220 aa12.62□□□□□ -0.39
COL9A3-210ENST00000472880 DPH3Q96FX2 82 aa12.62□□□□□ -0.39
COL9A3-210ENST00000472880 OSTCQ9NRP0 149 aa12.62□□□□□ -0.39
COL9A3-210ENST00000472880 IGKV3OR2-268A0A0C4DH90 116 aa12.61□□□□□ -0.39
COL9A3-210ENST00000472880 FOXA3P55318 350 aaPredicted RBP12.61□□□□□ -0.39
COL9A3-210ENST00000472880 SMIM15Q7Z3B0 74 aa12.61□□□□□ -0.39
COL9A3-210ENST00000472880 SMDT1Q9H4I9 107 aa12.61□□□□□ -0.39
COL9A3-210ENST00000472880 GAGE12HA6NDE8 117 aa12.6□□□□□ -0.39
COL9A3-210ENST00000472880 TMEM241Q24JQ0 296 aa12.6□□□□□ -0.39
COL9A3-210ENST00000472880 AMMECR1LQ6DCA0 310 aa12.6□□□□□ -0.39
COL9A3-210ENST00000472880 CFAP161Q6P656 301 aa12.6□□□□□ -0.39
COL9A3-210ENST00000472880 TSKUQ8WUA8 353 aa12.6□□□□□ -0.39
COL9A3-210ENST00000472880 ISOC2Q96AB3 205 aa12.6□□□□□ -0.39
COL9A3-210ENST00000472880 RNF185Q96GF1 192 aa12.6□□□□□ -0.39
COL9A3-210ENST00000472880 HMCN2Q8NDA2 5059 aa12.59□□□□□ -0.39
COL9A3-210ENST00000472880 SLPIP03973 132 aa12.59□□□□□ -0.39
COL9A3-210ENST00000472880 CHTF8P0CG12 524 aa12.59□□□□□ -0.39
COL9A3-210ENST00000472880 RPL23P62829 140 aaKnown RBP12.59□□□□□ -0.39
COL9A3-210ENST00000472880 PLA2G2DQ9UNK4 145 aa12.59□□□□□ -0.39
COL9A3-210ENST00000472880 NCR2O95944 276 aa12.58□□□□□ -0.4
COL9A3-210ENST00000472880 APCSP02743 223 aa12.58□□□□□ -0.4
COL9A3-210ENST00000472880 C15orf56Q8N910 161 aa12.58□□□□□ -0.4
COL9A3-210ENST00000472880 SPACA4Q8TDM5 124 aa12.58□□□□□ -0.4
COL9A3-210ENST00000472880 RPL39LQ96EH5 51 aaKnown RBP12.58□□□□□ -0.4
COL9A3-210ENST00000472880 NAT8Q9UHE5 227 aa12.58□□□□□ -0.4
COL9A3-210ENST00000472880 V9GYV3 84 aa12.58□□□□□ -0.4
COL9A3-210ENST00000472880 A0A087WYN8 130 aa12.57□□□□□ -0.4
COL9A3-210ENST00000472880 FAM231BA6NCW3 169 aa12.57□□□□□ -0.4
COL9A3-210ENST00000472880 HIGD1CA8MV81 97 aa12.57□□□□□ -0.4
COL9A3-210ENST00000472880 RNASEKQ6P5S7 137 aaKnown RBP12.57□□□□□ -0.4
COL9A3-210ENST00000472880 BORCS7Q96B45 105 aa12.57□□□□□ -0.4
COL9A3-210ENST00000472880 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-210ENST00000472880 IGKV2-29A2NJV5 120 aaPredicted RBP12.56□□□□□ -0.4
COL9A3-210ENST00000472880 ADIRFQ15847 76 aa12.56□□□□□ -0.4
COL9A3-210ENST00000472880 H7C423 109 aa12.55□□□□□ -0.4
COL9A3-210ENST00000472880 HIGD2BQ4VC39 106 aa12.55□□□□□ -0.4
COL9A3-210ENST00000472880 Q6ZRU5 148 aa12.55□□□□□ -0.4
COL9A3-210ENST00000472880 CHCHD10Q8WYQ3 142 aaPredicted RBP12.55□□□□□ -0.4
COL9A3-210ENST00000472880 A0A1B0GUT8 65 aa12.54□□□□□ -0.4
COL9A3-210ENST00000472880 SDHAF1A6NFY7 115 aa12.54□□□□□ -0.4
COL9A3-210ENST00000472880 FGF6P10767 208 aa12.54□□□□□ -0.4
COL9A3-210ENST00000472880 RPS10P46783 165 aaKnown RBP12.54□□□□□ -0.4
COL9A3-210ENST00000472880 RAB14P61106 215 aa12.53□□□□□ -0.4
COL9A3-210ENST00000472880 C7orf33Q8WU49 177 aa12.53□□□□□ -0.4
COL9A3-210ENST00000472880 PLAC8Q9NZF1 115 aa12.53□□□□□ -0.4
COL9A3-210ENST00000472880 ZNF25P17030 456 aaPredicted RBP12.52□□□□□ -0.41
COL9A3-210ENST00000472880 COX6A2Q02221 97 aa12.52□□□□□ -0.41
COL9A3-210ENST00000472880 GVQW2A0A096LPI5 108 aaPredicted RBP12.51□□□□□ -0.41
COL9A3-210ENST00000472880 I3L3M4 83 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms